Index

_

__eq__() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) (medkit.core.audio.audio_buffer.AudioBuffer method) (medkit.core.audio.audio_buffer.FileAudioBuffer method) (medkit.core.audio.audio_buffer.MemoryAudioBuffer method) (medkit.core.audio.audio_buffer.PlaceholderAudioBuffer method) (medkit.core.audio.AudioBuffer method) (medkit.core.audio.FileAudioBuffer method) (medkit.core.audio.MemoryAudioBuffer method) __getitem__() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) (medkit.training.BatchData method) (medkit.training.utils.BatchData method) __init_subclass__() (medkit.core.Attribute class method) (medkit.core.attribute.Attribute class method) (medkit.core.audio.annotation.Segment class method) (medkit.core.audio.audio_buffer.AudioBuffer class method) (medkit.core.audio.AudioBuffer class method) (medkit.core.audio.AudioDocument class method) (medkit.core.audio.document.AudioDocument class method) (medkit.core.audio.Segment class method) (medkit.core.dict_conv.SubclassMapping class method) (medkit.core.text.annotation.TextAnnotation class method) (medkit.core.text.AnySpan class method) (medkit.core.text.document.TextDocument class method) (medkit.core.text.span.AnySpan class method) (medkit.core.text.TextAnnotation class method) (medkit.core.text.TextDocument class method) __iter__() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) __len__() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) __post_init__() (medkit.text.context.family_detector.FamilyDetectorRule method) (medkit.text.context.FamilyDetectorRule method) (medkit.text.context.hypothesis_detector.HypothesisDetectorRule method) (medkit.text.context.HypothesisDetectorRule method) (medkit.text.context.negation_detector.NegationDetectorRule method) (medkit.text.context.NegationDetectorRule method) (medkit.text.ner.regexp_matcher.RegexpMatcherRule method) (medkit.text.ner.RegexpMatcherRule method) __repr__() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) _add_prov_from_sub_tracer_for_data_item() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) _add_provenance() (medkit.core.Pipeline method) (medkit.core.pipeline.Pipeline method) _add_relations_to_document() (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor method) _aligner (medkit.text.translation.hf_translator.HFTranslator attribute) _analyzer (medkit.text.deid.PIIDetector attribute) _ann_ids (medkit.core.annotation_container.AnnotationContainer attribute) (medkit.core.AnnotationContainer attribute) _ann_ids_by_key (medkit.core.annotation_container.AnnotationContainer attribute) (medkit.core.AnnotationContainer attribute) _ann_ids_by_label (medkit.core.annotation_container.AnnotationContainer attribute) (medkit.core.AnnotationContainer attribute) _asr (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) _attr_entity_values (medkit.io._brat_utils.BratAnnConfiguration attribute) _attr_ids (medkit.core.attribute_container.AttributeContainer attribute) (medkit.core.AttributeContainer attribute) _attr_ids_by_label (medkit.core.attribute_container.AttributeContainer attribute) (medkit.core.AttributeContainer attribute) _attr_label (medkit.audio.transcription.doc_transcriber.DocTranscriber attribute) (medkit.audio.transcription.DocTranscriber attribute) _attr_relation_values (medkit.io._brat_utils.BratAnnConfiguration attribute) _attribute_to_str() (medkit.io._brat_utils.BratAnnConfiguration static method) _build_entity() (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher method) (medkit.text.ner.edsnlp_date_matcher.EDSNLPDateMatcher method) _build_prov_from_node() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) _build_rttm_row() (medkit.io.rttm.RTTMOutputConverter method) (medkit.io.RTTMOutputConverter method) _build_rules() (medkit.text.ner.umls_matcher.UMLSMatcher class method) (medkit.text.ner.UMLSMatcher class method) _build_segment() (medkit.io.srt.SRTInputConverter method) _build_sentence() (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer method) (medkit.text.segmentation.SentenceTokenizer method) _build_turn_segment() (medkit.io.rttm.RTTMInputConverter method) (medkit.io.RTTMInputConverter method) _build_umls_embeddings() (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer method) _check_crlf_character() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) _clean_segment_text() (medkit.text.preprocessing.eds_cleaner.EDSCleaner method) (medkit.text.preprocessing.EDSCleaner method) _convert_attribute_to_brat() (medkit.io.brat.BratOutputConverter static method) (medkit.io.BratOutputConverter static method) _convert_attributes_to_brat_note() (medkit.io.brat.BratOutputConverter static method) (medkit.io.BratOutputConverter static method) _convert_doc_by_task() (medkit.io.doccano.DoccanoOutputConverter method) (medkit.io.DoccanoOutputConverter method) _convert_doc_relation_extraction() (medkit.io.doccano.DoccanoOutputConverter method) (medkit.io.DoccanoOutputConverter method) _convert_doc_seq_labeling() (medkit.io.doccano.DoccanoOutputConverter method) (medkit.io.DoccanoOutputConverter method) _convert_doc_text_classification() (medkit.io.doccano.DoccanoOutputConverter method) (medkit.io.DoccanoOutputConverter method) _convert_medkit_anns_to_brat() (medkit.io.brat.BratOutputConverter method) (medkit.io.BratOutputConverter method) _convert_relation_to_brat() (medkit.io.brat.BratOutputConverter static method) (medkit.io.BratOutputConverter static method) _convert_segment_to_brat() (medkit.io.brat.BratOutputConverter method) (medkit.io.BratOutputConverter method) _convert_speech_segs_to_words() (medkit.audio.metrics.transcription.TranscriptionEvaluator method) _convert_umls_attributes_to_brat_note() (medkit.io.brat.BratOutputConverter static method) (medkit.io.BratOutputConverter static method) _create_duplicate_segment() (medkit.text.preprocessing.duplicate_finder.DuplicateFinder method) (medkit.text.preprocessing.DuplicateFinder method) _create_entity_from_iamsystem_ann() (medkit.text.ner.iamsystem_matcher.IAMSystemMatcher method) _create_nondup_segment() (medkit.text.preprocessing.duplicate_finder.DuplicateFinder method) (medkit.text.preprocessing.DuplicateFinder method) _create_norm_attr() (medkit.text.ner.regexp_matcher.RegexpMatcher static method) (medkit.text.ner.RegexpMatcher static method) _create_relation() (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor method) _create_segment_doc() (medkit.text.postprocessing.document_splitter.DocumentSplitter method) (medkit.text.postprocessing.DocumentSplitter method) _data_collator (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) _DEFAULT_ALIGNMENT_MODEL (medkit.text.translation.hf_translator.HFTranslator attribute) _DEFAULT_LABEL (medkit.text.preprocessing.eds_cleaner.EDSCleaner attribute) (medkit.text.preprocessing.EDSCleaner attribute) (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) (medkit.text.translation.hf_translator.HFTranslator attribute) _DEFAULT_NAME_SPACY_MODEL (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) _DEFAULT_PUNCT_CHARS (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) _DEFAULT_STRIP_CHARS (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) _DEFAULT_TRANSLATION_MODEL (medkit.text.translation.hf_translator.HFTranslator attribute) _define_source_target() (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor method) _description (medkit.core.Operation attribute) (medkit.core.operation.Operation attribute) _detect_activity_in_segment() (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector method) _detect_family_ref_in_segment() (medkit.text.context.family_detector.FamilyDetector method) (medkit.text.context.FamilyDetector method) _detect_hypothesis_in_segment() (medkit.text.context.hypothesis_detector.HypothesisDetector method) (medkit.text.context.HypothesisDetector method) _detect_negation_in_segment() (medkit.text.context.negation_detector.NegationDetector method) (medkit.text.context.NegationDetector method) _detect_turns_in_segment() (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector method) _doc_id (medkit.core.annotation_container.AnnotationContainer attribute) (medkit.core.AnnotationContainer attribute) _downmix_segment() (medkit.audio.preprocessing.Downmixer method) (medkit.audio.preprocessing.downmixer.Downmixer method) _duplicate_attr() (medkit.text.postprocessing.attribute_duplicator.AttributeDuplicator method) (medkit.text.postprocessing.AttributeDuplicator method) _edsnlp (medkit.text.ner.edsnlp_date_matcher.EDSNLPDateMatcher attribute) (medkit.text.ner.edsnlp_tnm_matcher.EDSNLPTNMMatcher attribute) _encode_text() (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) _ensure_text_and_spans() (medkit.io.brat.BratOutputConverter static method) (medkit.io.BratOutputConverter static method) _entity_ids (medkit.core.text.annotation_container.TextAnnotationContainer attribute) (medkit.core.text.TextAnnotationContainer attribute) _entity_types (medkit.io._brat_utils.BratAnnConfiguration attribute) _exclusion_patterns (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) (medkit.text.ner.regexp_matcher.RegexpMatcher attribute) (medkit.text.ner.RegexpMatcher attribute) _extract_attr_values() (medkit.text.metrics.classification.TextClassificationEvaluator method) _filter_attrs_from_ann() (medkit.text.postprocessing.document_splitter.DocumentSplitter method) (medkit.text.postprocessing.DocumentSplitter method) _filter_overlapping_matches() (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher static method) _find_best_matches() (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer method) _find_dates_in_segment() (medkit.text.ner.edsnlp_date_matcher.EDSNLPDateMatcher method) _find_duplicate_in_docs() (medkit.text.preprocessing.duplicate_finder.DuplicateFinder method) (medkit.text.preprocessing.DuplicateFinder method) _find_duplicates_in_doc() (medkit.text.preprocessing.duplicate_finder.DuplicateFinder method) (medkit.text.preprocessing.DuplicateFinder method) _find_matches_in_segment() (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher method) (medkit.text.ner.duckling_matcher.DucklingMatcher method) (medkit.text.ner.DucklingMatcher method) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher method) (medkit.text.ner.regexp_matcher.RegexpMatcher method) (medkit.text.ner.RegexpMatcher method)

_find_matches_in_segment_for_rule() (medkit.text.ner.regexp_matcher.RegexpMatcher method) (medkit.text.ner.RegexpMatcher method) _find_matching_rule() (medkit.text.context.family_detector.FamilyDetector method) (medkit.text.context.FamilyDetector method) (medkit.text.context.hypothesis_detector.HypothesisDetector method) (medkit.text.context.HypothesisDetector method) (medkit.text.context.negation_detector.NegationDetector method) (medkit.text.context.NegationDetector method) _find_matching_verb() (medkit.text.context.hypothesis_detector.HypothesisDetector method) (medkit.text.context.HypothesisDetector method) _find_sections_in_segment() (medkit.text.segmentation.section_tokenizer.SectionTokenizer method) (medkit.text.segmentation.SectionTokenizer method) _find_segments_in_spacy_doc() (medkit.text.spacy.pipeline.SpacyPipeline method) (medkit.text.spacy.SpacyPipeline method) _find_sentences_in_segment() (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer method) (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer method) (medkit.text.segmentation.SentenceTokenizer method) _find_syntactic_relations() (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor method) _find_syntagmas_in_segment() (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer method) (medkit.text.segmentation.SyntagmaTokenizer method) _find_tnms_in_segment() (medkit.text.ner.edsnlp_tnm_matcher.EDSNLPTNMMatcher method) _generate_raw_segment() (medkit.core.audio.AudioDocument class method) (medkit.core.audio.document.AudioDocument class method) (medkit.core.text.document.TextDocument class method) (medkit.core.text.TextDocument class method) _get_aggregated_vad() (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector method) _get_label_mapping() (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher static method) _get_labels_by_semgroup() (medkit.text.ner.umls_matcher.UMLSMatcher class method) (medkit.text.ner.UMLSMatcher class method) _get_pa_annotation() (medkit.audio.metrics.diarization.DiarizationEvaluator method) _get_path_to_install() (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher class method) _get_sections_to_rename() (medkit.text.segmentation.section_tokenizer.SectionTokenizer method) (medkit.text.segmentation.SectionTokenizer method) _get_translated_spans() (medkit.text.translation.hf_translator.HFTranslator method) _get_valid_model_config() (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) _graph (medkit.core.prov_tracer.ProvTracer attribute) (medkit.core.ProvTracer attribute) _has_non_unicode_sensitive_rule (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) (medkit.text.ner.regexp_matcher.RegexpMatcher attribute) (medkit.text.ner.RegexpMatcher attribute) _install_paths (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) _load_anns() (medkit.io.spacy.SpacyInputConverter method) _load_from_checkpoint_dir() (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher static method) _load_rows() (medkit.io.rttm.RTTMInputConverter static method) (medkit.io.RTTMInputConverter static method) _load_umls_embeddings() (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer method) _matcher (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) _matches_to_entities() (medkit.text.ner.hf_entity_matcher.HFEntityMatcher method) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher method) _merge() (medkit.core._prov_graph.ProvGraph method) _newline_pattern (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) _nlp (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) _nodes_by_id (medkit.core._prov_graph.ProvGraph attribute) _NON_EMPTY_REGEXP (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) _non_empty_text_pattern (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) _norm_ids (medkit.core.text.entity_attribute_container.EntityAttributeContainer attribute) (medkit.core.text.EntityAttributeContainer attribute) _normalize_entity() (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer method) _normalize_segment() (medkit.audio.preprocessing.power_normalizer.PowerNormalizer method) (medkit.audio.preprocessing.PowerNormalizer method) _normalize_segment_text() (medkit.text.preprocessing.regexp_replacer.RegexpReplacer method) (medkit.text.preprocessing.RegexpReplacer method) _output_duplicate (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) _output_nondup (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) _owner_id (medkit.core.attribute_container.AttributeContainer attribute) (medkit.core.AttributeContainer attribute) _parse_attribute() (in module medkit.io._brat_utils) _parse_doc_line() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) _parse_doc_line_relation_extraction() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) _parse_doc_line_seq_labeling() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) _parse_doc_line_text_classification() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) _parse_entity() (in module medkit.io._brat_utils) _parse_note() (in module medkit.io._brat_utils) _parse_relation() (in module medkit.io._brat_utils) _pattern (medkit.text.preprocessing.regexp_replacer.RegexpReplacer attribute) (medkit.text.preprocessing.RegexpReplacer attribute) _patterns (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) (medkit.text.ner.regexp_matcher.RegexpMatcher attribute) (medkit.text.ner.RegexpMatcher attribute) _patterns_by_verb (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) _perform_step() (medkit.core.Pipeline method) (medkit.core.pipeline.Pipeline method) _pipeline (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.text.ner.hf_entity_matcher.HFEntityMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) _process_doc() (medkit.core.doc_pipeline.DocPipeline method) (medkit.core.DocPipeline method) _process_segment_text() (medkit.text.preprocessing.char_replacer.CharReplacer method) (medkit.text.preprocessing.CharReplacer method) _progress_bar (medkit.training.callbacks.DefaultPrinterCallback attribute) (medkit.training.DefaultPrinterCallback attribute) _prov_tracer (medkit.core.Operation attribute) (medkit.core.operation.Operation attribute) (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) (medkit.io.brat.BratInputConverter attribute) (medkit.io.BratInputConverter attribute) (medkit.io.doccano.DoccanoInputConverter attribute) (medkit.io.DoccanoInputConverter attribute) (medkit.io.rttm.RTTMInputConverter attribute) (medkit.io.RTTMInputConverter attribute) (medkit.io.spacy.SpacyInputConverter attribute) (medkit.io.spacy.SpacyOutputConverter attribute) (medkit.io.srt.SRTInputConverter attribute) _punct_pattern (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) _rel_types_arg_1 (medkit.io._brat_utils.BratAnnConfiguration attribute) _rel_types_arg_2 (medkit.io._brat_utils.BratAnnConfiguration attribute) _relation_ids (medkit.core.text.annotation_container.TextAnnotationContainer attribute) (medkit.core.text.TextAnnotationContainer attribute) _relation_ids_by_source_id (medkit.core.text.annotation_container.TextAnnotationContainer attribute) (medkit.core.text.TextAnnotationContainer attribute) _relation_to_str() (medkit.io._brat_utils.BratAnnConfiguration static method) _resample_segment() (medkit.audio.preprocessing.resampler.Resampler method) _rules_db (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) _run_one() (medkit.text.deid.PIIDetector method) _rush (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) _sample_rate (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) _segment_ids (medkit.core.text.annotation_container.TextAnnotationContainer attribute) (medkit.core.text.TextAnnotationContainer attribute) _SEMGROUP_BY_SEMTYPE (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) _semtype_to_semgroup (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) _sf_info (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) _signal (medkit.core.audio.audio_buffer.MemoryAudioBuffer attribute) (medkit.core.audio.MemoryAudioBuffer attribute) _simstring_db_reader (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) _split_text() (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer static method) (medkit.text.segmentation.SentenceTokenizer static method) _store (medkit.core.annotation_container.AnnotationContainer attribute) (medkit.core.AnnotationContainer attribute) (medkit.core.attribute_container.AttributeContainer attribute) (medkit.core.AttributeContainer attribute) (medkit.core.GlobalStore attribute) (medkit.core.store.GlobalStore attribute) _sub_graphs_by_op_id (medkit.core._prov_graph.ProvGraph attribute) _sub_prov_tracer (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) _subclasses (medkit.core.dict_conv.SubclassMapping attribute) _tag_text_with_entities() (medkit.text.metrics.ner.SeqEvalEvaluator method) _temp_dir (medkit.text.ner.simstring_matcher.SimstringMatcher attribute) (medkit.text.ner.SimstringMatcher attribute) _test_connection() (medkit.text.ner.duckling_matcher.DucklingMatcher method) (medkit.text.ner.DucklingMatcher method) _torch_device (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) _transcribe_audios() (medkit.audio.transcription.hf_transcriber.HFTranscriber method) (medkit.audio.transcription.sb_transcriber.SBTranscriber method) _transcribe_doc() (medkit.audio.transcription.doc_transcriber.DocTranscriber method) (medkit.audio.transcription.DocTranscriber method) _translate_segments() (medkit.text.translation.hf_translator.HFTranslator method) _translation_pipeline (medkit.text.translation.hf_translator.HFTranslator attribute) _trim_end (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) _trim_start (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) _umls_entries (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) _umls_version (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) _vad (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute)

A

accepted_semtypes (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) add() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) (medkit.core.audio.annotation_container.AudioAnnotationContainer method) (medkit.core.audio.AudioAnnotationContainer method) (medkit.core.text.annotation_container.TextAnnotationContainer method) (medkit.core.text.entity_attribute_container.EntityAttributeContainer method) (medkit.core.text.EntityAttributeContainer method) (medkit.core.text.TextAnnotationContainer method) add_attribute_type() (medkit.io._brat_utils.BratAnnConfiguration method) add_class_name_to_data_dict() (in module medkit.core.dict_conv) add_entity_type() (medkit.io._brat_utils.BratAnnConfiguration method) add_install() (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher class method) add_node() (medkit.core._prov_graph.ProvGraph method) add_prov() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) add_prov_from_sub_tracer() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) add_relation_type() (medkit.io._brat_utils.BratAnnConfiguration method) add_sub_graph() (medkit.core._prov_graph.ProvGraph method) add_trailing_dot (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) ADICAPNormAttribute (class in medkit.text.ner) (class in medkit.text.ner.adicap_norm_attribute) aggregate_input_keys (medkit.core.pipeline.PipelineStep attribute) (medkit.core.PipelineStep attribute) aggressiveness (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute) align_and_map_tokens_with_tags() (in module medkit.text.ner.hf_tokenization_utils) alignment_layer (medkit.text.translation.hf_translator.HFTranslator attribute) alignment_model (medkit.text.translation.hf_translator.HFTranslator attribute) alignment_threshold (medkit.text.translation.hf_translator.HFTranslator attribute) ALL_CHAR_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules) all_docs (medkit.core.Collection property) (medkit.core.collection.Collection property) allow_multiline (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) Annotation (class in medkit.core.annotation) AnnotationContainer (class in medkit.core) (class in medkit.core.annotation_container) AnnotationType (in module medkit.core) (in module medkit.core.annotation) anns (medkit.core.audio.AudioDocument attribute) (medkit.core.audio.document.AudioDocument attribute) (medkit.core.Document attribute) (medkit.core.document.Document attribute) (medkit.core.text.document.TextDocument attribute) (medkit.core.text.TextDocument attribute) anns_labels (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratOutputConverter attribute) (medkit.io.doccano.DoccanoOutputConverter attribute) (medkit.io.DoccanoOutputConverter attribute) AnySpan (class in medkit.core.text) (class in medkit.core.text.span) apply_nlp_spacy (medkit.io.spacy.SpacyOutputConverter attribute) arg1 (medkit.io._brat_utils.RelationConf attribute) arg2 (medkit.io._brat_utils.RelationConf attribute) asr_class (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) attr_entity_values (medkit.io._brat_utils.BratAnnConfiguration property) attr_label (medkit.io.doccano.DoccanoInputConverter attribute) (medkit.io.doccano.DoccanoOutputConverter attribute) (medkit.io.DoccanoInputConverter attribute) (medkit.io.DoccanoOutputConverter attribute) (medkit.text.metrics.classification.TextClassificationEvaluator attribute) attr_labels (medkit.text.postprocessing.attribute_duplicator.AttributeDuplicator attribute) (medkit.text.postprocessing.AttributeDuplicator attribute) (medkit.text.postprocessing.document_splitter.DocumentSplitter attribute) (medkit.text.postprocessing.DocumentSplitter attribute)

attr_relation_values (medkit.io._brat_utils.BratAnnConfiguration property) Attribute (class in medkit.core) (class in medkit.core.attribute) AttributeConf (class in medkit.io._brat_utils) AttributeContainer (class in medkit.core) (class in medkit.core.attribute_container) AttributeDuplicator (class in medkit.text.postprocessing) (class in medkit.text.postprocessing.attribute_duplicator) attributes (medkit.io._brat_utils.BratAugmentedEntity attribute) (medkit.io._brat_utils.BratDocument attribute) attrs (medkit.core.annotation.Annotation attribute) (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.AudioDocument attribute) (medkit.core.audio.document.AudioDocument attribute) (medkit.core.audio.Segment attribute) (medkit.core.data_item.IdentifiableDataItemWithAttrs attribute) (medkit.core.Document attribute) (medkit.core.document.Document attribute) (medkit.core.IdentifiableDataItemWithAttrs attribute) (medkit.core.text.annotation.Entity attribute) (medkit.core.text.annotation.TextAnnotation attribute) (medkit.core.text.document.TextDocument attribute) (medkit.core.text.Entity attribute) (medkit.core.text.TextAnnotation attribute) (medkit.core.text.TextDocument attribute) (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratOutputConverter attribute) (medkit.io.spacy.SpacyInputConverter attribute) (medkit.io.spacy.SpacyOutputConverter attribute) attrs_to_copy (medkit.audio.transcription.doc_transcriber.DocTranscriber attribute) (medkit.audio.transcription.DocTranscriber attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute) (medkit.text.ner.edsnlp_date_matcher.EDSNLPDateMatcher attribute) (medkit.text.ner.edsnlp_tnm_matcher.EDSNLPTNMMatcher attribute) (medkit.text.ner.hf_entity_matcher.HFEntityMatcher attribute) (medkit.text.ner.iamsystem_matcher.IAMSystemMatcher attribute) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher attribute) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.regexp_matcher.RegexpMatcher attribute) (medkit.text.ner.RegexpMatcher attribute) (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) audio (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.AudioDocument property) (medkit.core.audio.document.AudioDocument property) (medkit.core.audio.Segment attribute) AUDIO_ANNOTATION_LIST (medkit.io.medkit_json._common.ContentType attribute) audio_doc_id (medkit.audio.transcription.transcribed_text_document.TranscribedTextDocument attribute) (medkit.audio.transcription.TranscribedTextDocument attribute) audio_docs (medkit.core.Collection attribute) (medkit.core.collection.Collection attribute) AUDIO_DOCUMENT (medkit.io.medkit_json._common.ContentType attribute) AUDIO_DOCUMENT_LIST (medkit.io.medkit_json._common.ContentType attribute) AudioAnnotationContainer (class in medkit.core.audio) (class in medkit.core.audio.annotation_container) AudioBuffer (class in medkit.core.audio) (class in medkit.core.audio.audio_buffer) AudioDocument (class in medkit.core.audio) (class in medkit.core.audio.document) augment_full_text_for_next_segment() (medkit.audio.transcription.doc_transcriber.DocTranscriber method) (medkit.audio.transcription.DocTranscriber method) average (medkit.text.metrics.ner.SeqEvalEvaluator attribute) (medkit.text.metrics.ner.SeqEvalMetricsComputer attribute)

B

BaseSimstringMatcher (class in medkit.text.ner._base_simstring_matcher) BaseSimstringMatcherNormalization (class in medkit.text.ner._base_simstring_matcher) BaseSimstringMatcherRule (class in medkit.text.ner._base_simstring_matcher) batch_size (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) (medkit.text.translation.hf_translator.HFTranslator attribute) (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) BatchData (class in medkit.training) (class in medkit.training.utils) batched (in module medkit._compat) behaviour_type (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute attribute) (medkit.text.ner.ADICAPNormAttribute attribute) blacklist (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) BratAnnConfiguration (class in medkit.io._brat_utils) BratAttribute (class in medkit.io._brat_utils)

BratAugmentedEntity (class in medkit.io._brat_utils) BratDocument (class in medkit.io._brat_utils) BratEntity (class in medkit.io._brat_utils) BratInputConverter (class in medkit.io) (class in medkit.io.brat) BratNote (class in medkit.io._brat_utils) BratOutputConverter (class in medkit.io) (class in medkit.io.brat) BratRelation (class in medkit.io._brat_utils) build_adicap_attribute() (in module medkit.text.spacy.edsnlp) build_date_attribute() (in module medkit.text.spacy.edsnlp) build_duration_attribute() (in module medkit.text.spacy.edsnlp) build_header() (in module medkit.io.medkit_json._common) build_measurement_attribute() (in module medkit.text.spacy.edsnlp) build_simstring_matcher_databases() (in module medkit.text.ner._base_simstring_matcher) build_spacy_doc_from_medkit_doc() (in module medkit.text.spacy.spacy_utils) build_spacy_doc_from_medkit_segment() (in module medkit.text.spacy.spacy_utils) build_tnm_attribute() (in module medkit.text.spacy.edsnlp)

C

cache_dir (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher attribute) (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) cache_params (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) cache_params_file (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) callback (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) capitalize (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) case_sensitive (medkit.audio.metrics.transcription.TranscriptionEvaluator attribute) (medkit.text.context.family_detector.FamilyDetectorRule attribute) (medkit.text.context.FamilyDetectorRule attribute) (medkit.text.context.hypothesis_detector.HypothesisDetectorRule attribute) (medkit.text.context.HypothesisDetectorRule attribute) (medkit.text.context.negation_detector.NegationDetectorRule attribute) (medkit.text.context.NegationDetectorRule attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherRule attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) cer (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) channel_wise (medkit.audio.preprocessing.power_normalizer.PowerNormalizer attribute) (medkit.audio.preprocessing.PowerNormalizer attribute) char_deletions (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) char_insertions (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) char_substitutions (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) char_support (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) CharReplacer (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.char_replacer) check_header() (in module medkit.io.medkit_json._common) check_model_for_task_hf() (in module medkit.tools.hf_utils) check_rules_sanity() (medkit.text.context.family_detector.FamilyDetector static method) (medkit.text.context.FamilyDetector static method) (medkit.text.context.hypothesis_detector.HypothesisDetector static method) (medkit.text.context.HypothesisDetector static method) (medkit.text.context.negation_detector.NegationDetector static method) (medkit.text.context.NegationDetector static method) (medkit.text.ner.regexp_matcher.RegexpMatcher static method) (medkit.text.ner.RegexpMatcher static method) check_sanity() (medkit.core._prov_graph.ProvGraph method) (medkit.core.Operation method) (medkit.core.operation.Operation method) (medkit.core.Pipeline method) (medkit.core.pipeline.Pipeline method) checkpoint_metric (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) checkpoint_period (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) class_name (medkit.core.operation_desc.OperationDescription attribute) (medkit.core.OperationDescription attribute) clean_multiple_whitespaces_in_sentence() (in module medkit.core.text.utils) clean_newline_character() (in module medkit.core.text.utils) clean_parentheses_eds() (in module medkit.core.text.utils) clean_up_gaps_in_normalized_spans() (in module medkit.core.text.span_utils) clear_installs() (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher class method) client_config (medkit.io.doccano.DoccanoInputConverter attribute) (medkit.io.DoccanoInputConverter attribute)

CLINENTITY_LABEL (in module medkit.tools.e3c_corpus) code (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute property) (medkit.text.ner.ADICAPNormAttribute property) collar (medkit.audio.metrics.diarization.DiarizationEvaluator attribute) collate() (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) (medkit.training.trainable_component.TrainableComponent method) (medkit.training.TrainableComponent method) Collection (class in medkit.core) (class in medkit.core.collection) column_label (medkit.io.doccano.DoccanoClientConfig attribute) (medkit.io.DoccanoClientConfig attribute) column_text (medkit.io.doccano.DoccanoClientConfig attribute) (medkit.io.DoccanoClientConfig attribute) component (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) compute() (medkit.audio.metrics.diarization.DiarizationEvaluator method) (medkit.audio.metrics.transcription.TranscriptionEvaluator method) (medkit.text.metrics.ner.SeqEvalEvaluator method) (medkit.text.metrics.ner.SeqEvalMetricsComputer method) (medkit.training.MetricsComputer method) (medkit.training.utils.MetricsComputer method) compute_classification_report() (medkit.text.metrics.classification.TextClassificationEvaluator method) compute_cohen_kappa() (medkit.text.metrics.classification.TextClassificationEvaluator method) compute_krippendorff_alpha() (medkit.text.metrics.classification.TextClassificationEvaluator method) compute_nested_segments() (in module medkit.text.postprocessing) (in module medkit.text.postprocessing.alignment_utils) concatenate() (in module medkit.core.text.span_utils) config (medkit.core.operation_desc.OperationDescription attribute) (medkit.core.OperationDescription attribute) (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) configure_optimizer() (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) (medkit.training.trainable_component.TrainableComponent method) (medkit.training.TrainableComponent method) confusion (medkit.audio.metrics.diarization.DiarizationEvaluatorResult attribute) console_handler (medkit.training.callbacks.DefaultPrinterCallback attribute) (medkit.training.DefaultPrinterCallback attribute) ContentType (class in medkit.io.medkit_json._common) ContextOperation (class in medkit.core.text) (class in medkit.core.text.operation) convert() (medkit.io.spacy.SpacyOutputConverter method) convert_cuis_to_notes (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratOutputConverter attribute) convert_data_annotation_to_medkit() (in module medkit.tools.e3c_corpus) convert_data_collection_to_medkit() (in module medkit.tools.e3c_corpus) convert_labels_to_tags() (in module medkit.text.ner.hf_tokenization_utils) convert_mtsamples_to_medkit() (in module medkit.tools.mtsamples) copy() (medkit.core.Attribute method) (medkit.core.attribute.Attribute method) create_config (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratOutputConverter attribute) CREATE_ONE_TO_N (medkit.core.text.CustomTextOpType attribute) (medkit.core.text.operation.CustomTextOpType attribute) create_prov_store() (in module medkit.core) (in module medkit.core.prov_store) create_text_operation() (in module medkit.core.text) (in module medkit.core.text.operation) cui (medkit.core.text.umls_norm_attribute.UMLSNormAttribute property) (medkit.core.text.UMLSNormAttribute property) (medkit.text.ner.umls_utils.UMLSEntry attribute) CustomTextOpType (class in medkit.core.text) (class in medkit.core.text.operation)

D

data_item (medkit.core.Prov attribute) (medkit.core.prov_tracer.Prov attribute) data_item_id (medkit.core._prov_graph.ProvNode attribute) dataloader_drop_last (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) dataloader_nb_workers (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) dataloader_pin_memory (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) date_metadata_key (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) DateAttribute (class in medkit.text.ner) (class in medkit.text.ner.date_attribute) day (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.DateAttribute attribute) days (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) DEFAULT_ATTRIBUTE_FACTORIES (in module medkit.text.spacy.edsnlp) DefaultPrinterCallback (class in medkit.training) (class in medkit.training.callbacks) del_store() (medkit.core.GlobalStore class method) (medkit.core.store.GlobalStore class method) der (medkit.audio.metrics.diarization.DiarizationEvaluatorResult attribute) derived_data_items (medkit.core.Prov attribute) (medkit.core.prov_tracer.Prov attribute) derived_ids (medkit.core._prov_graph.ProvNode attribute) DescribableOperation (class in medkit.core) (class in medkit.core.pipeline) description (medkit.core.DescribableOperation attribute) (medkit.core.Operation property) (medkit.core.operation.Operation property) (medkit.core.Pipeline property) (medkit.core.pipeline.DescribableOperation attribute) (medkit.core.pipeline.Pipeline property) (medkit.io.brat.BratInputConverter property) (medkit.io.brat.BratOutputConverter property) (medkit.io.BratInputConverter property) (medkit.io.BratOutputConverter property) (medkit.io.doccano.DoccanoInputConverter property) (medkit.io.doccano.DoccanoOutputConverter property) (medkit.io.DoccanoInputConverter property) (medkit.io.DoccanoOutputConverter property) (medkit.io.rttm.RTTMInputConverter property) (medkit.io.RTTMInputConverter property) (medkit.io.spacy.SpacyInputConverter property) (medkit.io.spacy.SpacyOutputConverter property) (medkit.io.srt.SRTInputConverter property) detect_cuis_in_notes (medkit.io.brat.BratInputConverter attribute) (medkit.io.BratInputConverter attribute)

device (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) (medkit.text.translation.hf_translator.HFTranslator attribute) (medkit.training.trainable_component.TrainableComponent property) (medkit.training.TrainableComponent property) (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) DiarizationEvaluator (class in medkit.audio.metrics.diarization) DiarizationEvaluatorResult (class in medkit.audio.metrics.diarization) DictConvertible (class in medkit.core.dict_conv) dims (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute) direction (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) do_metrics_in_training (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) DoccanoClientConfig (class in medkit.io) (class in medkit.io.doccano) DoccanoInputConverter (class in medkit.io) (class in medkit.io.doccano) DoccanoOutputConverter (class in medkit.io) (class in medkit.io.doccano) DoccanoTask (class in medkit.io) (class in medkit.io.doccano) DocOperation (class in medkit.core) (class in medkit.core.operation) DocPipeline (class in medkit.core) (class in medkit.core.doc_pipeline) DocTranscriber (class in medkit.audio.transcription) (class in medkit.audio.transcription.doc_transcriber) Document (class in medkit.core) (class in medkit.core.document) DocumentSplitter (class in medkit.text.postprocessing) (class in medkit.text.postprocessing.document_splitter) DOT_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules) Downmixer (class in medkit.audio.preprocessing) (class in medkit.audio.preprocessing.downmixer) DucklingMatcher (class in medkit.text.ner) (class in medkit.text.ner.duckling_matcher) DuplicateFinder (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.duplicate_finder) DuplicationAttribute (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.duplicate_finder) duration (medkit.core.audio.audio_buffer.AudioBuffer property) (medkit.core.audio.AudioBuffer property) DurationAttribute (class in medkit.text.ner) (class in medkit.text.ner.date_attribute)

E

EDSCleaner (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.eds_cleaner) EDSNLPDateMatcher (class in medkit.text.ner.edsnlp_date_matcher) EDSNLPDocPipeline (class in medkit.text.spacy.edsnlp) EDSNLPPipeline (class in medkit.text.spacy.edsnlp) EDSNLPTNMMatcher (class in medkit.text.ner.edsnlp_tnm_matcher) embedding_batch_size (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) embeddings_cache_dir (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) end (medkit.core.audio.Span attribute) (medkit.core.audio.span.Span attribute) (medkit.core.text.Span attribute) (medkit.core.text.span.Span attribute) (medkit.io._brat_utils.BratAugmentedEntity property) (medkit.io._brat_utils.BratEntity property) ensure_attr_value() (in module medkit.io._brat_utils) ent_label (medkit.text.ner.iamsystem_matcher.MedkitKeyword attribute) entities (medkit.core.text.annotation_container.TextAnnotationContainer property) (medkit.core.text.TextAnnotationContainer property) (medkit.io._brat_utils.BratDocument attribute) (medkit.io.spacy.SpacyInputConverter attribute) entities_source (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) entities_target (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) entities_to_displacy() (in module medkit.text.spacy.displacy_utils) Entity (class in medkit.core.text) (class in medkit.core.text.annotation)

entity_labels (medkit.text.postprocessing.document_splitter.DocumentSplitter attribute) (medkit.text.postprocessing.DocumentSplitter attribute) entity_types (medkit.io._brat_utils.BratAnnConfiguration property) EntityAttributeContainer (class in medkit.core.text) (class in medkit.core.text.entity_attribute_container) EntityNormAttribute (class in medkit.core.text) (class in medkit.core.text.entity_norm_attribute) eval_dataloader (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) evaluation_epoch() (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) exclusion_regexp (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) exclusion_regexps (medkit.text.context.family_detector.FamilyDetectorRule attribute) (medkit.text.context.FamilyDetectorRule attribute) (medkit.text.context.hypothesis_detector.HypothesisDetectorRule attribute) (medkit.text.context.HypothesisDetectorRule attribute) (medkit.text.context.negation_detector.NegationDetectorRule attribute) (medkit.text.context.NegationDetectorRule attribute) extract() (in module medkit.core.text.span_utils) extract_anns_and_attrs_from_spacy_doc() (in module medkit.text.spacy.spacy_utils) EXTRACT_ONE_TO_N (medkit.core.text.CustomTextOpType attribute) (medkit.core.text.operation.CustomTextOpType attribute)

F

false_alarm (medkit.audio.metrics.diarization.DiarizationEvaluatorResult attribute) FamilyDetector (class in medkit.text.context) (class in medkit.text.context.family_detector) FamilyDetectorRule (class in medkit.text.context) (class in medkit.text.context.family_detector) FamilyMetadata (class in medkit.text.context) (class in medkit.text.context.family_detector) fast (medkit.audio.preprocessing.resampler.Resampler attribute) FileAudioBuffer (class in medkit.core.audio) (class in medkit.core.audio.audio_buffer) FILTER (medkit.core.text.CustomTextOpType attribute) (medkit.core.text.operation.CustomTextOpType attribute) filter_overlapping_entities() (in module medkit.text.postprocessing) (in module medkit.text.postprocessing.overlapping) fingerprint_length (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) fingerprint_type (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) formatter (medkit.training.callbacks.DefaultPrinterCallback attribute) (medkit.training.DefaultPrinterCallback attribute) forward() (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) (medkit.training.trainable_component.TrainableComponent method) (medkit.training.TrainableComponent method) FRACTION_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules) frame_duration (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute) from_audio_buffer() (medkit.core.audio.audio_buffer.PlaceholderAudioBuffer class method) from_dict() (medkit.audio.transcription.transcribed_text_document.TranscribedTextDocument class method) (medkit.audio.transcription.TranscribedTextDocument class method) (medkit.core.Attribute class method) (medkit.core.attribute.Attribute class method) (medkit.core.audio.annotation.Segment class method) (medkit.core.audio.audio_buffer.AudioBuffer class method) (medkit.core.audio.audio_buffer.FileAudioBuffer class method) (medkit.core.audio.audio_buffer.MemoryAudioBuffer class method) (medkit.core.audio.audio_buffer.PlaceholderAudioBuffer class method) (medkit.core.audio.AudioBuffer class method) (medkit.core.audio.AudioDocument class method) (medkit.core.audio.document.AudioDocument class method) (medkit.core.audio.FileAudioBuffer class method) (medkit.core.audio.MemoryAudioBuffer class method) (medkit.core.audio.Segment class method) (medkit.core.audio.Span class method) (medkit.core.audio.span.Span class method) (medkit.core.dict_conv.DictConvertible class method) (medkit.core.text.annotation.Relation class method) (medkit.core.text.annotation.Segment class method) (medkit.core.text.annotation.TextAnnotation class method) (medkit.core.text.AnySpan class method) (medkit.core.text.document.TextDocument class method) (medkit.core.text.entity_norm_attribute.EntityNormAttribute class method) (medkit.core.text.EntityNormAttribute class method) (medkit.core.text.ModifiedSpan class method) (medkit.core.text.Relation class method) (medkit.core.text.Segment class method) (medkit.core.text.Span class method) (medkit.core.text.span.AnySpan class method) (medkit.core.text.span.ModifiedSpan class method) (medkit.core.text.span.Span class method) (medkit.core.text.TextAnnotation class method) (medkit.core.text.TextDocument class method) (medkit.core.text.umls_norm_attribute.UMLSNormAttribute class method) (medkit.core.text.UMLSNormAttribute class method) (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute class method) (medkit.text.ner.ADICAPNormAttribute class method) (medkit.text.ner.date_attribute.DateAttribute class method) (medkit.text.ner.date_attribute.DurationAttribute class method) (medkit.text.ner.date_attribute.RelativeDateAttribute class method) (medkit.text.ner.DateAttribute class method) (medkit.text.ner.DurationAttribute class method) (medkit.text.ner.RelativeDateAttribute class method) (medkit.text.ner.simstring_matcher.SimstringMatcherNormalization static method) (medkit.text.ner.simstring_matcher.SimstringMatcherRule static method) (medkit.text.ner.SimstringMatcherNormalization static method) (medkit.text.ner.SimstringMatcherRule static method) (medkit.text.ner.tnm_attribute.TNMAttribute class method) (medkit.text.preprocessing.duplicate_finder.DuplicationAttribute class method) (medkit.text.preprocessing.DuplicationAttribute class method)

from_dir() (medkit.core.audio.AudioDocument class method) (medkit.core.audio.document.AudioDocument class method) (medkit.core.text.document.TextDocument class method) (medkit.core.text.TextDocument class method) from_entity (medkit.io._brat_utils.AttributeConf attribute) from_file() (medkit.core.audio.AudioDocument class method) (medkit.core.audio.document.AudioDocument class method) (medkit.core.text.document.TextDocument class method) (medkit.core.text.TextDocument class method) FUTURE (medkit.text.ner.date_attribute.RelativeDateDirection attribute) (medkit.text.ner.RelativeDateDirection attribute)

G

generate_deterministic_id() (in module medkit.core) (in module medkit.core.id) generate_id() (in module medkit.core) (in module medkit.core.id) get() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) (medkit.core.audio.annotation_container.AudioAnnotationContainer method) (medkit.core.audio.AudioAnnotationContainer method) (medkit.core.text.annotation_container.TextAnnotationContainer method) (medkit.core.text.TextAnnotationContainer method) get_anns_by_type() (in module medkit.io._common) get_ascii_from_unicode() (in module medkit.text.utils.decoding) get_augmented_entities() (medkit.io._brat_utils.BratDocument method) get_by_id() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) (medkit.core.attribute_container.AttributeContainer method) (medkit.core.AttributeContainer method) (medkit.core.audio.annotation_container.AudioAnnotationContainer method) (medkit.core.audio.AudioAnnotationContainer method) (medkit.core.text.annotation_container.TextAnnotationContainer method) (medkit.core.text.TextAnnotationContainer method) get_class_name() (in module medkit.core.dict_conv) get_class_name_from_data_dict() (in module medkit.core.dict_conv) get_containing_audio_spans() (medkit.audio.transcription.transcribed_text_document.TranscribedTextDocument method) (medkit.audio.transcription.TranscribedTextDocument method) get_data_item() (medkit.core.prov_store.ProvStore method) (medkit.core.ProvStore method) (medkit.core.Store method) (medkit.core.store.Store method) get_dataloader() (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) get_entities() (medkit.core.text.annotation_container.TextAnnotationContainer method) (medkit.core.text.TextAnnotationContainer method) get_example() (medkit.text.context.hypothesis_detector.HypothesisDetector class method) (medkit.text.context.HypothesisDetector class method) (medkit.text.segmentation.section_tokenizer.SectionTokenizer class method) (medkit.text.segmentation.SectionTokenizer class method) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer class method) (medkit.text.segmentation.SyntagmaTokenizer class method)

get_ids() (medkit.core.annotation_container.AnnotationContainer method) (medkit.core.AnnotationContainer method) get_node() (medkit.core._prov_graph.ProvGraph method) get_nodes() (medkit.core._prov_graph.ProvGraph method) get_norms() (medkit.core.text.entity_attribute_container.EntityAttributeContainer method) (medkit.core.text.EntityAttributeContainer method) get_op_desc() (medkit.core.prov_store.ProvStore method) (medkit.core.ProvStore method) get_parent_item() (medkit.core.Store method) (medkit.core.store.Store method) get_prov() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) get_provs() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) get_relations() (medkit.core.text.annotation_container.TextAnnotationContainer method) (medkit.core.text.TextAnnotationContainer method) get_segments() (medkit.core.text.annotation_container.TextAnnotationContainer method) (medkit.core.text.TextAnnotationContainer method) get_snippet() (medkit.core.text.document.TextDocument method) (medkit.core.text.TextDocument method) get_store() (medkit.core.GlobalStore class method) (medkit.core.store.GlobalStore class method) get_sub_graph() (medkit.core._prov_graph.ProvGraph method) get_sub_graphs() (medkit.core._prov_graph.ProvGraph method) get_sub_prov_tracer() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) get_sub_prov_tracers() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) get_subclass() (medkit.core.dict_conv.SubclassMapping class method) get_subclass_for_data_dict() (medkit.core.dict_conv.SubclassMapping class method) GlobalStore (class in medkit.core) (class in medkit.core.store) gradient_accumulation_steps (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) Grouping (class in medkit.io._brat_utils) GROUPING_ENTITIES (in module medkit.io._brat_utils) GROUPING_RELATIONS (in module medkit.io._brat_utils) groups (medkit.io._brat_utils.BratDocument attribute) guess_umls_version() (in module medkit.text.ner.umls_utils)

H

handle_parentheses_eds (medkit.text.preprocessing.eds_cleaner.EDSCleaner attribute) (medkit.text.preprocessing.EDSCleaner attribute) handle_points_eds (medkit.text.preprocessing.eds_cleaner.EDSCleaner attribute) (medkit.text.preprocessing.EDSCleaner attribute) has_node() (medkit.core._prov_graph.ProvGraph method) has_prov() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) has_sub_graph() (medkit.core._prov_graph.ProvGraph method) has_sub_prov_tracer() (medkit.core.prov_tracer.ProvTracer method) (medkit.core.ProvTracer method) HFEntityMatcher (class in medkit.text.ner.hf_entity_matcher) HFEntityMatcherTrainable (class in medkit.text.ner.hf_entity_matcher_trainable) HFTranscriber (class in medkit.audio.transcription.hf_transcriber) HFTranslator (class in medkit.text.translation.hf_translator)

hour (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.DateAttribute attribute) hours (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) HypothesisDetector (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector) HypothesisDetectorRule (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector) HypothesisRuleMetadata (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector) HypothesisVerbMetadata (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector)

I

IAMSystemMatcher (class in medkit.text.ner.iamsystem_matcher) id (medkit.text.context.family_detector.FamilyDetectorRule attribute) (medkit.text.context.FamilyDetectorRule attribute) (medkit.text.context.hypothesis_detector.HypothesisDetectorRule attribute) (medkit.text.context.HypothesisDetectorRule attribute) (medkit.text.context.negation_detector.NegationDetectorRule attribute) (medkit.text.context.NegationDetectorRule attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) id_to_label (medkit.text.metrics.ner.SeqEvalMetricsComputer attribute) (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) IdentifiableDataItem (class in medkit.core) (class in medkit.core.data_item) IdentifiableDataItemWithAttrs (class in medkit.core) (class in medkit.core.data_item) ignore_segments (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratOutputConverter attribute) (medkit.io.doccano.DoccanoOutputConverter attribute) (medkit.io.DoccanoOutputConverter attribute) import_optional() (in module medkit._import) include_metadata (medkit.io.doccano.DoccanoOutputConverter attribute) (medkit.io.DoccanoOutputConverter attribute) index_extract (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) init_args (medkit.audio.preprocessing.Downmixer attribute) (medkit.audio.preprocessing.downmixer.Downmixer attribute) (medkit.audio.preprocessing.power_normalizer.PowerNormalizer attribute) (medkit.audio.preprocessing.PowerNormalizer attribute) (medkit.audio.preprocessing.resampler.Resampler attribute) (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute) (medkit.audio.transcription.doc_transcriber.DocTranscriber attribute) (medkit.audio.transcription.DocTranscriber attribute) (medkit.core.doc_pipeline.DocPipeline attribute) (medkit.core.DocPipeline attribute) (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute) (medkit.text.ner.hf_entity_matcher.HFEntityMatcher attribute) (medkit.text.ner.iamsystem_matcher.IAMSystemMatcher attribute) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher attribute) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.regexp_matcher.RegexpMatcher attribute) (medkit.text.ner.RegexpMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) (medkit.text.postprocessing.attribute_duplicator.AttributeDuplicator attribute) (medkit.text.postprocessing.AttributeDuplicator attribute) (medkit.text.postprocessing.document_splitter.DocumentSplitter attribute) (medkit.text.postprocessing.DocumentSplitter attribute) (medkit.text.preprocessing.char_replacer.CharReplacer attribute) (medkit.text.preprocessing.CharReplacer attribute) (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) (medkit.text.preprocessing.eds_cleaner.EDSCleaner attribute) (medkit.text.preprocessing.EDSCleaner attribute) (medkit.text.preprocessing.regexp_replacer.RegexpReplacer attribute) (medkit.text.preprocessing.RegexpReplacer attribute) (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.pipeline.SpacyPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyPipeline attribute) (medkit.text.translation.hf_translator.HFTranslator attribute)

init_store() (medkit.core.GlobalStore class method) (medkit.core.store.GlobalStore class method) input_keys (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) (medkit.core.pipeline.PipelineStep attribute) (medkit.core.PipelineStep attribute) input_label (medkit.audio.transcription.doc_transcriber.DocTranscriber attribute) (medkit.audio.transcription.DocTranscriber attribute) InputConverter (class in medkit.core) (class in medkit.core.conversion) insert() (in module medkit.core.text.span_utils) items (medkit.io._brat_utils.Grouping attribute)

K

kb_id (medkit.core.text.entity_norm_attribute.EntityNormAttribute attribute) (medkit.core.text.EntityNormAttribute attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherNormalization attribute) (medkit.text.ner.iamsystem_matcher.MedkitKeyword attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherNormalization attribute) (medkit.text.ner.RegexpMatcherNormalization attribute) kb_name (medkit.core.text.entity_norm_attribute.EntityNormAttribute attribute) (medkit.core.text.EntityNormAttribute attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherNormalization attribute) (medkit.text.ner.iamsystem_matcher.MedkitKeyword attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherNormalization attribute) (medkit.text.ner.RegexpMatcherNormalization attribute) kb_version (medkit.core.text.entity_norm_attribute.EntityNormAttribute attribute) (medkit.core.text.EntityNormAttribute attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherNormalization attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherNormalization attribute) (medkit.text.ner.RegexpMatcherNormalization attribute)

keep_endlines (medkit.text.preprocessing.eds_cleaner.EDSCleaner attribute) (medkit.text.preprocessing.EDSCleaner attribute) keep_newlines (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) keep_punct (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) keys (medkit.core.annotation.Annotation attribute) (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.Segment attribute) (medkit.core.text.annotation.TextAnnotation attribute) (medkit.core.text.TextAnnotation attribute) keyword_processor (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) krippendorff_alpha() (in module medkit.text.metrics.irr_utils)

L

label (medkit.core.annotation.Annotation attribute) (medkit.core.Attribute attribute) (medkit.core.attribute.Attribute attribute) (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.Segment attribute) (medkit.core.text.annotation.TextAnnotation attribute) LABEL (medkit.core.text.entity_norm_attribute.EntityNormAttribute attribute) (medkit.core.text.EntityNormAttribute attribute) label (medkit.core.text.TextAnnotation attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherRule attribute) (medkit.text.ner.iamsystem_matcher.MedkitKeyword attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) LABEL (medkit.text.ner.tnm_attribute.TNMAttribute attribute) (medkit.text.preprocessing.duplicate_finder.DuplicationAttribute attribute) (medkit.text.preprocessing.DuplicationAttribute attribute) label_mapping (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) label_provider (medkit.text.ner.iamsystem_matcher.IAMSystemMatcher attribute) label_to_id (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) labels_anns (medkit.io.spacy.SpacyOutputConverter attribute) labels_by_input_key (medkit.core.doc_pipeline.DocPipeline attribute) (medkit.core.DocPipeline attribute) labels_by_semgroup (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) labels_remapping (medkit.text.metrics.ner.SeqEvalEvaluator attribute) language (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) learning_rate (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) length (medkit.core.audio.Span property) (medkit.core.audio.span.Span property) (medkit.core.text.annotation.Segment attribute) (medkit.core.text.AnySpan attribute) (medkit.core.text.ModifiedSpan attribute) (medkit.core.text.Segment attribute) (medkit.core.text.Span property) (medkit.core.text.span.AnySpan attribute) (medkit.core.text.span.ModifiedSpan attribute) (medkit.core.text.span.Span property) LIGATURE_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules) load() (medkit.core.conversion.InputConverter method) (medkit.core.InputConverter method) (medkit.io.brat.BratInputConverter method) (medkit.io.BratInputConverter method) (medkit.io.rttm.RTTMInputConverter method) (medkit.io.RTTMInputConverter method) (medkit.io.spacy.SpacyInputConverter method) (medkit.io.srt.SRTInputConverter method) (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) (medkit.training.trainable_component.TrainableComponent method) (medkit.training.TrainableComponent method) load_annotated_document() (in module medkit.tools.e3c_corpus) load_annotations() (medkit.io.brat.BratInputConverter method) (medkit.io.BratInputConverter method) load_audio_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio)

load_audio_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) load_audio_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) load_data_annotation() (in module medkit.tools.e3c_corpus) load_data_collection() (in module medkit.tools.e3c_corpus) load_doc() (medkit.io.brat.BratInputConverter method) (medkit.io.BratInputConverter method) (medkit.io.rttm.RTTMInputConverter method) (medkit.io.RTTMInputConverter method) (medkit.io.srt.SRTInputConverter method) load_document() (in module medkit.tools.e3c_corpus) load_from_directory_zip() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) load_from_file() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) load_from_zip() (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) load_mtsamples() (in module medkit.tools.mtsamples) load_rules() (medkit.text.context.family_detector.FamilyDetector static method) (medkit.text.context.FamilyDetector static method) (medkit.text.context.hypothesis_detector.HypothesisDetector static method) (medkit.text.context.HypothesisDetector static method) (medkit.text.context.negation_detector.NegationDetector static method) (medkit.text.context.NegationDetector static method) (medkit.text.ner.regexp_matcher.RegexpMatcher static method) (medkit.text.ner.RegexpMatcher static method) (medkit.text.ner.simstring_matcher.SimstringMatcher static method) (medkit.text.ner.SimstringMatcher static method) load_section_definition() (medkit.text.segmentation.section_tokenizer.SectionTokenizer static method) (medkit.text.segmentation.SectionTokenizer static method) load_segments() (medkit.io.srt.SRTInputConverter method) load_syntagma_definition() (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer static method) (medkit.text.segmentation.SyntagmaTokenizer static method) load_text_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) load_text_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) load_text_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) load_turns() (medkit.io.rttm.RTTMInputConverter method) (medkit.io.RTTMInputConverter method) load_umls_entries() (in module medkit.text.ner.umls_utils) load_verbs() (medkit.text.context.hypothesis_detector.HypothesisDetector static method) (medkit.text.context.HypothesisDetector static method) locale (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute) logger (in module medkit.io._brat_utils) (in module medkit.io._common) (medkit.training.callbacks.DefaultPrinterCallback attribute) (medkit.training.DefaultPrinterCallback attribute) lowercase (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) lr_scheduler (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) lstrip() (in module medkit.core.text.utils)

M

make_forward_pass() (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) make_trainable() (medkit.text.ner.hf_entity_matcher.HFEntityMatcher static method) matched_verb (medkit.text.context.hypothesis_detector.HypothesisVerbMetadata attribute) (medkit.text.context.HypothesisVerbMetadata attribute) matcher (medkit.text.ner.iamsystem_matcher.IAMSystemMatcher attribute) max_length (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) max_nb_matches (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) max_nb_speakers (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) measure (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) medkit module medkit._compat module medkit._import module medkit.audio module medkit.audio.metrics module medkit.audio.metrics.diarization module medkit.audio.metrics.transcription module medkit.audio.preprocessing module medkit.audio.preprocessing.downmixer module medkit.audio.preprocessing.power_normalizer module medkit.audio.preprocessing.resampler module medkit.audio.segmentation module medkit.audio.segmentation.pa_speaker_detector module medkit.audio.segmentation.webrtc_voice_detector module medkit.audio.transcription module medkit.audio.transcription.doc_transcriber module medkit.audio.transcription.hf_transcriber module medkit.audio.transcription.sb_transcriber module medkit.audio.transcription.transcribed_text_document module medkit.core module medkit.core._prov_graph module medkit.core.annotation module medkit.core.annotation_container module medkit.core.attribute module medkit.core.attribute_container module medkit.core.audio module medkit.core.audio.annotation module medkit.core.audio.annotation_container module medkit.core.audio.audio_buffer module medkit.core.audio.document module medkit.core.audio.operation module medkit.core.audio.span module medkit.core.collection module medkit.core.conversion module medkit.core.data_item module medkit.core.dict_conv module medkit.core.doc_pipeline module medkit.core.document module medkit.core.id module medkit.core.operation module medkit.core.operation_desc module medkit.core.pipeline module medkit.core.prov_store module medkit.core.prov_tracer module medkit.core.store module medkit.core.text module medkit.core.text.annotation module medkit.core.text.annotation_container module medkit.core.text.document module medkit.core.text.entity_attribute_container module medkit.core.text.entity_norm_attribute module medkit.core.text.operation module medkit.core.text.span module medkit.core.text.span_utils module medkit.core.text.umls_norm_attribute module medkit.core.text.utils module medkit.io module medkit.io._brat_utils module medkit.io._common module medkit.io.brat module medkit.io.doccano module medkit.io.medkit_json module medkit.io.medkit_json._common module medkit.io.medkit_json.audio module medkit.io.medkit_json.text module medkit.io.rttm module medkit.io.spacy module medkit.io.srt module medkit.text module medkit.text.context module medkit.text.context.family_detector module medkit.text.context.hypothesis_detector module medkit.text.context.negation_detector module medkit.text.deid module medkit.text.metrics module medkit.text.metrics.classification module medkit.text.metrics.irr_utils module medkit.text.metrics.ner module medkit.text.ner module medkit.text.ner._base_simstring_matcher module medkit.text.ner.adicap_norm_attribute module medkit.text.ner.date_attribute module medkit.text.ner.duckling_matcher module medkit.text.ner.edsnlp_date_matcher module medkit.text.ner.edsnlp_tnm_matcher module medkit.text.ner.hf_entity_matcher module medkit.text.ner.hf_entity_matcher_trainable module medkit.text.ner.hf_tokenization_utils module medkit.text.ner.iamsystem_matcher module medkit.text.ner.nlstruct_entity_matcher module medkit.text.ner.quick_umls_matcher module medkit.text.ner.regexp_matcher module medkit.text.ner.simstring_matcher module medkit.text.ner.tnm_attribute module medkit.text.ner.umls_coder_normalizer module medkit.text.ner.umls_matcher module medkit.text.ner.umls_utils module medkit.text.postprocessing module medkit.text.postprocessing.alignment_utils module medkit.text.postprocessing.attribute_duplicator module medkit.text.postprocessing.document_splitter module medkit.text.postprocessing.overlapping module medkit.text.preprocessing module medkit.text.preprocessing.char_replacer module medkit.text.preprocessing.char_rules module medkit.text.preprocessing.duplicate_finder module medkit.text.preprocessing.eds_cleaner module medkit.text.preprocessing.regexp_replacer module medkit.text.relations module medkit.text.relations.syntactic_relation_extractor module medkit.text.segmentation module medkit.text.segmentation.rush_sentence_tokenizer module medkit.text.segmentation.section_tokenizer module medkit.text.segmentation.sentence_tokenizer module medkit.text.segmentation.syntagma_tokenizer module

medkit.text.spacy module medkit.text.spacy.displacy_utils module medkit.text.spacy.doc_pipeline module medkit.text.spacy.edsnlp module medkit.text.spacy.pipeline module medkit.text.spacy.spacy_utils module medkit.text.translation module medkit.text.translation.hf_translator module medkit.text.utils module medkit.text.utils.decoding module medkit.tools module medkit.tools._save_prov_to_dot module medkit.tools.e3c_corpus module medkit.tools.hf_utils module medkit.tools.mtsamples module medkit.training module medkit.training.callbacks module medkit.training.trainable_component module medkit.training.trainer module medkit.training.trainer_config module medkit.training.utils module medkit_attribute_factories (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.pipeline.SpacyPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyPipeline attribute) medkit_attrs (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) medkit_doc_to_displacy() (in module medkit.text.spacy.displacy_utils) MEDKIT_JSON_VERSION (in module medkit.io.medkit_json._common) medkit_labels_anns (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) MedkitKeyword (class in medkit.text.ner.iamsystem_matcher) MemoryAudioBuffer (class in medkit.core.audio) (class in medkit.core.audio.audio_buffer) metadata (medkit.core.Attribute attribute) (medkit.core.attribute.Attribute attribute) (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.AudioDocument attribute) (medkit.core.audio.document.AudioDocument attribute) (medkit.core.audio.Segment attribute) (medkit.core.text.annotation.TextAnnotation attribute) (medkit.core.text.document.TextDocument attribute) (medkit.core.text.TextAnnotation attribute) (medkit.core.text.TextDocument attribute) metastasis (medkit.text.ner.tnm_attribute.TNMAttribute attribute) metric_to_track_lr (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) metrics_computer (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) MetricsComputer (class in medkit.training) (class in medkit.training.utils) min_duplicate_length (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) min_duration (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) min_length (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) min_nb_speakers (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) minimize_checkpoint_metric (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) minute (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.DateAttribute attribute) minutes (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) missed_detection (medkit.audio.metrics.diarization.DiarizationEvaluatorResult attribute) model (medkit.text.ner.hf_entity_matcher.HFEntityMatcher attribute) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) model_config (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) model_name (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) model_name_or_dirpath (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher attribute) model_name_or_path (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) modes_and_tenses (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) ModifiedSpan (class in medkit.core.text) (class in medkit.core.text.span) module medkit medkit._compat medkit._import medkit.audio medkit.audio.metrics medkit.audio.metrics.diarization medkit.audio.metrics.transcription medkit.audio.preprocessing medkit.audio.preprocessing.downmixer medkit.audio.preprocessing.power_normalizer medkit.audio.preprocessing.resampler medkit.audio.segmentation medkit.audio.segmentation.pa_speaker_detector medkit.audio.segmentation.webrtc_voice_detector medkit.audio.transcription medkit.audio.transcription.doc_transcriber medkit.audio.transcription.hf_transcriber medkit.audio.transcription.sb_transcriber medkit.audio.transcription.transcribed_text_document medkit.core medkit.core._prov_graph medkit.core.annotation medkit.core.annotation_container medkit.core.attribute medkit.core.attribute_container medkit.core.audio medkit.core.audio.annotation medkit.core.audio.annotation_container medkit.core.audio.audio_buffer medkit.core.audio.document medkit.core.audio.operation medkit.core.audio.span medkit.core.collection medkit.core.conversion medkit.core.data_item medkit.core.dict_conv medkit.core.doc_pipeline medkit.core.document medkit.core.id medkit.core.operation medkit.core.operation_desc medkit.core.pipeline medkit.core.prov_store medkit.core.prov_tracer medkit.core.store medkit.core.text medkit.core.text.annotation medkit.core.text.annotation_container medkit.core.text.document medkit.core.text.entity_attribute_container medkit.core.text.entity_norm_attribute medkit.core.text.operation medkit.core.text.span medkit.core.text.span_utils medkit.core.text.umls_norm_attribute medkit.core.text.utils medkit.io medkit.io._brat_utils medkit.io._common medkit.io.brat medkit.io.doccano medkit.io.medkit_json medkit.io.medkit_json._common medkit.io.medkit_json.audio medkit.io.medkit_json.text medkit.io.rttm medkit.io.spacy medkit.io.srt medkit.text medkit.text.context medkit.text.context.family_detector medkit.text.context.hypothesis_detector medkit.text.context.negation_detector medkit.text.deid medkit.text.metrics medkit.text.metrics.classification medkit.text.metrics.irr_utils medkit.text.metrics.ner medkit.text.ner medkit.text.ner._base_simstring_matcher medkit.text.ner.adicap_norm_attribute medkit.text.ner.date_attribute medkit.text.ner.duckling_matcher medkit.text.ner.edsnlp_date_matcher medkit.text.ner.edsnlp_tnm_matcher medkit.text.ner.hf_entity_matcher medkit.text.ner.hf_entity_matcher_trainable medkit.text.ner.hf_tokenization_utils medkit.text.ner.iamsystem_matcher medkit.text.ner.nlstruct_entity_matcher medkit.text.ner.quick_umls_matcher medkit.text.ner.regexp_matcher medkit.text.ner.simstring_matcher medkit.text.ner.tnm_attribute medkit.text.ner.umls_coder_normalizer medkit.text.ner.umls_matcher medkit.text.ner.umls_utils medkit.text.postprocessing medkit.text.postprocessing.alignment_utils medkit.text.postprocessing.attribute_duplicator medkit.text.postprocessing.document_splitter medkit.text.postprocessing.overlapping medkit.text.preprocessing medkit.text.preprocessing.char_replacer medkit.text.preprocessing.char_rules medkit.text.preprocessing.duplicate_finder medkit.text.preprocessing.eds_cleaner medkit.text.preprocessing.regexp_replacer medkit.text.relations medkit.text.relations.syntactic_relation_extractor medkit.text.segmentation medkit.text.segmentation.rush_sentence_tokenizer medkit.text.segmentation.section_tokenizer medkit.text.segmentation.sentence_tokenizer medkit.text.segmentation.syntagma_tokenizer medkit.text.spacy medkit.text.spacy.displacy_utils medkit.text.spacy.doc_pipeline medkit.text.spacy.edsnlp medkit.text.spacy.pipeline medkit.text.spacy.spacy_utils medkit.text.translation medkit.text.translation.hf_translator medkit.text.utils medkit.text.utils.decoding medkit.tools medkit.tools._save_prov_to_dot medkit.tools.e3c_corpus medkit.tools.hf_utils medkit.tools.mtsamples medkit.training medkit.training.callbacks medkit.training.trainable_component medkit.training.trainer medkit.training.trainer_config medkit.training.utils month (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.DateAttribute attribute) months (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) move() (in module medkit.core.text.span_utils)

N

name (medkit.core.operation_desc.OperationDescription attribute) (medkit.core.OperationDescription attribute) (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) name_spacy_model (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) nb_channels (medkit.core.audio.audio_buffer.AudioBuffer attribute) (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.AudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) nb_frames_in_window (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute) nb_samples (medkit.core.audio.audio_buffer.AudioBuffer attribute) (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.AudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) nb_training_epochs (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) nb_umls_embeddings_chunks (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) NegationDetector (class in medkit.text.context) (class in medkit.text.context.negation_detector) NegationDetectorRule (class in medkit.text.context) (class in medkit.text.context.negation_detector) NegationMetadata (class in medkit.text.context) (class in medkit.text.context.negation_detector) NEROperation (class in medkit.core.text) (class in medkit.core.text.operation)

new_section_name (medkit.text.segmentation.section_tokenizer.SectionModificationRule attribute) (medkit.text.segmentation.SectionModificationRule attribute) nlp (medkit.io.spacy.SpacyOutputConverter attribute) (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.pipeline.SpacyPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyPipeline attribute) NLStructEntityMatcher (class in medkit.text.ner.nlstruct_entity_matcher) node (medkit.text.ner.tnm_attribute.TNMAttribute attribute) node_specification (medkit.text.ner.tnm_attribute.TNMAttribute attribute) node_suffix (medkit.text.ner.tnm_attribute.TNMAttribute attribute) normalizations (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherRule attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) normalize_embeddings (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) normalize_spans() (in module medkit.core.text.span_utils) normalize_unicode (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) norms (medkit.core.text.entity_attribute_container.EntityAttributeContainer property) (medkit.core.text.EntityAttributeContainer property) notes (medkit.io._brat_utils.BratDocument attribute) notes_label (medkit.io.brat.BratInputConverter attribute) (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratInputConverter attribute) (medkit.io.BratOutputConverter attribute)

O

obj (medkit.io._brat_utils.BratRelation attribute) on_epoch_begin() (medkit.training.callbacks.TrainerCallback method) (medkit.training.TrainerCallback method) on_epoch_end() (medkit.training.callbacks.DefaultPrinterCallback method) (medkit.training.callbacks.TrainerCallback method) (medkit.training.DefaultPrinterCallback method) (medkit.training.TrainerCallback method) on_save() (medkit.training.callbacks.DefaultPrinterCallback method) (medkit.training.callbacks.TrainerCallback method) (medkit.training.DefaultPrinterCallback method) (medkit.training.TrainerCallback method) on_step_begin() (medkit.training.callbacks.DefaultPrinterCallback method) (medkit.training.callbacks.TrainerCallback method) (medkit.training.DefaultPrinterCallback method) (medkit.training.TrainerCallback method) on_step_end() (medkit.training.callbacks.DefaultPrinterCallback method) (medkit.training.callbacks.TrainerCallback method) (medkit.training.DefaultPrinterCallback method) (medkit.training.TrainerCallback method) on_train_begin() (medkit.training.callbacks.DefaultPrinterCallback method) (medkit.training.callbacks.TrainerCallback method) (medkit.training.DefaultPrinterCallback method) (medkit.training.TrainerCallback method) on_train_end() (medkit.training.callbacks.DefaultPrinterCallback method) (medkit.training.callbacks.TrainerCallback method) (medkit.training.DefaultPrinterCallback method) (medkit.training.TrainerCallback method) op_desc (medkit.core.Prov attribute) (medkit.core.prov_tracer.Prov attribute) Operation (class in medkit.core) (class in medkit.core.operation) operation (medkit.core.pipeline.PipelineStep attribute) (medkit.core.PipelineStep attribute) operation_id (medkit.core._prov_graph.ProvNode attribute) OperationDescription (class in medkit.core) (class in medkit.core.operation_desc) optimizer (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) order (medkit.text.segmentation.section_tokenizer.SectionModificationRule attribute) (medkit.text.segmentation.SectionModificationRule attribute) orf (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) organ (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute attribute) (medkit.text.ner.ADICAPNormAttribute attribute) other_sections (medkit.text.segmentation.section_tokenizer.SectionModificationRule attribute) (medkit.text.segmentation.SectionModificationRule attribute) output_dir (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute)

output_keys (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) (medkit.core.pipeline.PipelineStep attribute) (medkit.core.PipelineStep attribute) output_label (medkit.audio.preprocessing.Downmixer attribute) (medkit.audio.preprocessing.downmixer.Downmixer attribute) (medkit.audio.preprocessing.power_normalizer.PowerNormalizer attribute) (medkit.audio.preprocessing.PowerNormalizer attribute) (medkit.audio.preprocessing.resampler.Resampler attribute) (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute) (medkit.audio.transcription.doc_transcriber.DocTranscriber attribute) (medkit.audio.transcription.doc_transcriber.TranscriptionOperation attribute) (medkit.audio.transcription.DocTranscriber attribute) (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.audio.transcription.sb_transcriber.SBTranscriber attribute) (medkit.audio.transcription.TranscriptionOperation attribute) (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute) (medkit.text.ner.edsnlp_date_matcher.EDSNLPDateMatcher attribute) (medkit.text.ner.edsnlp_tnm_matcher.EDSNLPTNMMatcher attribute) (medkit.text.preprocessing.char_replacer.CharReplacer attribute) (medkit.text.preprocessing.CharReplacer attribute) (medkit.text.preprocessing.duplicate_finder.DuplicateFinder attribute) (medkit.text.preprocessing.DuplicateFinder attribute) (medkit.text.preprocessing.eds_cleaner.EDSCleaner attribute) (medkit.text.preprocessing.EDSCleaner attribute) (medkit.text.preprocessing.regexp_replacer.RegexpReplacer attribute) (medkit.text.preprocessing.RegexpReplacer attribute) (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) (medkit.text.translation.hf_translator.HFTranslator attribute) OutputConverter (class in medkit.core) (class in medkit.core.conversion) overlapping (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) overlaps() (medkit.core.text.Span method) (medkit.core.text.span.Span method)

P

parse_file() (in module medkit.io._brat_utils) parse_string() (in module medkit.io._brat_utils) PASpeakerDetector (class in medkit.audio.segmentation.pa_speaker_detector) PAST (medkit.text.ner.date_attribute.RelativeDateDirection attribute) (medkit.text.ner.RelativeDateDirection attribute) path (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) path_to_install (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) path_to_rules (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer attribute) pathology (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute attribute) (medkit.text.ner.ADICAPNormAttribute attribute) pathology_type (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute attribute) (medkit.text.ner.ADICAPNormAttribute attribute) PIIDetector (class in medkit.text.deid) Pipeline (class in medkit.core) (class in medkit.core.pipeline) pipeline (medkit.core.doc_pipeline.DocPipeline attribute) (medkit.core.DocPipeline attribute) PipelineCompatibleOperation (class in medkit.core) (class in medkit.core.pipeline) PipelineStep (class in medkit.core) (class in medkit.core.pipeline) PlaceholderAudioBuffer (class in medkit.core.audio.audio_buffer) PowerNormalizer (class in medkit.audio.preprocessing) (class in medkit.audio.preprocessing.power_normalizer) prefix (medkit.text.ner.tnm_attribute.TNMAttribute attribute)

prepare_batch() (medkit.text.metrics.ner.SeqEvalMetricsComputer method) (medkit.training.MetricsComputer method) (medkit.training.utils.MetricsComputer method) preprocess() (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) (medkit.training.trainable_component.TrainableComponent method) (medkit.training.TrainableComponent method) preprocess_acronym() (in module medkit.text.ner.umls_utils) preprocess_term_to_match() (in module medkit.text.ner.umls_utils) PreprocessingOperation (class in medkit.core.audio) (class in medkit.core.audio.operation) prevent_clipping (medkit.audio.preprocessing.Downmixer attribute) (medkit.audio.preprocessing.downmixer.Downmixer attribute) Prov (class in medkit.core) (class in medkit.core.prov_tracer) ProvCompatibleOperation (class in medkit.core) (class in medkit.core.pipeline) ProvGraph (class in medkit.core._prov_graph) ProvNode (class in medkit.core._prov_graph) ProvStore (class in medkit.core) (class in medkit.core.prov_store) ProvTracer (class in medkit.core) (class in medkit.core.prov_tracer) punct_chars (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) punct_string (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute)

Q

QuickUMLSMatcher (class in medkit.text.ner.quick_umls_matcher)

QUOTATION_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules)

R

RAW_LABEL (medkit.core.audio.AudioDocument attribute) (medkit.core.audio.document.AudioDocument attribute) (medkit.core.text.document.TextDocument attribute) (medkit.core.text.TextDocument attribute) raw_segment (medkit.core.audio.annotation_container.AudioAnnotationContainer attribute) (medkit.core.audio.AudioAnnotationContainer attribute) (medkit.core.audio.AudioDocument attribute) (medkit.core.audio.document.AudioDocument attribute) (medkit.core.Document attribute) (medkit.core.document.Document attribute) (medkit.core.text.annotation_container.TextAnnotationContainer attribute) (medkit.core.text.document.TextDocument attribute) (medkit.core.text.TextAnnotationContainer attribute) (medkit.core.text.TextDocument attribute) read() (medkit.core.audio.audio_buffer.AudioBuffer method) (medkit.core.audio.audio_buffer.FileAudioBuffer method) (medkit.core.audio.audio_buffer.MemoryAudioBuffer method) (medkit.core.audio.audio_buffer.PlaceholderAudioBuffer method) (medkit.core.audio.AudioBuffer method) (medkit.core.audio.FileAudioBuffer method) (medkit.core.audio.MemoryAudioBuffer method) regex_rule (medkit.text.preprocessing.regexp_replacer.RegexpReplacer attribute) (medkit.text.preprocessing.RegexpReplacer attribute) regex_rules (medkit.text.preprocessing.regexp_replacer.RegexpReplacer attribute) (medkit.text.preprocessing.RegexpReplacer attribute) regexp (medkit.text.context.family_detector.FamilyDetectorRule attribute) (medkit.text.context.FamilyDetectorRule attribute) (medkit.text.context.hypothesis_detector.HypothesisDetectorRule attribute) (medkit.text.context.HypothesisDetectorRule attribute) (medkit.text.context.negation_detector.NegationDetectorRule attribute) (medkit.text.context.NegationDetectorRule attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) RegexpMatcher (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpMatcherNormalization (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpMatcherRule (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpMetadata (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpReplacer (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.regexp_replacer) register_subclass() (medkit.core.dict_conv.SubclassMapping class method) rel_types_arg_1 (medkit.io._brat_utils.BratAnnConfiguration property) rel_types_arg_2 (medkit.io._brat_utils.BratAnnConfiguration property) Relation (class in medkit.core.text) (class in medkit.core.text.annotation) RELATION_EXTRACTION (medkit.io.doccano.DoccanoTask attribute) (medkit.io.DoccanoTask attribute) relation_label (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor attribute) relation_labels (medkit.text.postprocessing.document_splitter.DocumentSplitter attribute) (medkit.text.postprocessing.DocumentSplitter attribute) RelationConf (class in medkit.io._brat_utils) relations (medkit.core.text.annotation_container.TextAnnotationContainer property) (medkit.core.text.TextAnnotationContainer property) (medkit.io._brat_utils.BratDocument attribute) relations_from_me (medkit.io._brat_utils.BratAugmentedEntity attribute) relations_to_me (medkit.io._brat_utils.BratAugmentedEntity attribute) RelativeDateAttribute (class in medkit.text.ner) (class in medkit.text.ner.date_attribute) RelativeDateDirection (class in medkit.text.ner) (class in medkit.text.ner.date_attribute) remove() (in module medkit.core.text.span_utils) remove_punctuation (medkit.audio.metrics.transcription.TranscriptionEvaluator attribute) replace() (in module medkit.core.text.span_utils) replace_multiple_newline_after_sentence() (in module medkit.core.text.utils) replace_newline_inside_sentence() (in module medkit.core.text.utils) replace_point_after_keywords() (in module medkit.core.text.utils) replace_point_before_keywords() (in module medkit.core.text.utils) replace_point_in_numbers() (in module medkit.core.text.utils) replace_point_in_uppercase() (in module medkit.core.text.utils) replace_unicode (medkit.audio.metrics.transcription.TranscriptionEvaluator attribute) replaced_spans (medkit.core.text.ModifiedSpan attribute) (medkit.core.text.span.ModifiedSpan attribute) Resampler (class in medkit.audio.preprocessing.resampler) resection_completeness (medkit.text.ner.tnm_attribute.TNMAttribute attribute) return_metrics_by_label (medkit.text.metrics.ner.SeqEvalEvaluator attribute) (medkit.text.metrics.ner.SeqEvalMetricsComputer attribute) rstrip() (in module medkit.core.text.utils) RTTMInputConverter (class in medkit.io) (class in medkit.io.rttm) RTTMOutputConverter (class in medkit.io) (class in medkit.io.rttm) rule_id (medkit.text.context.family_detector.FamilyMetadata attribute) (medkit.text.context.FamilyMetadata attribute) (medkit.text.context.hypothesis_detector.HypothesisRuleMetadata attribute) (medkit.text.context.HypothesisRuleMetadata attribute) (medkit.text.context.negation_detector.NegationMetadata attribute) (medkit.text.context.NegationMetadata attribute) (medkit.text.ner.regexp_matcher.RegexpMetadata attribute) (medkit.text.ner.RegexpMetadata attribute)

rules (medkit.text.context.family_detector.FamilyDetector attribute) (medkit.text.context.FamilyDetector attribute) (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) (medkit.text.context.negation_detector.NegationDetector attribute) (medkit.text.context.NegationDetector attribute) (medkit.text.ner.regexp_matcher.RegexpMatcher attribute) (medkit.text.ner.RegexpMatcher attribute) (medkit.text.preprocessing.char_replacer.CharReplacer attribute) (medkit.text.preprocessing.CharReplacer attribute) (medkit.text.preprocessing.regexp_replacer.RegexpReplacer attribute) (medkit.text.preprocessing.RegexpReplacer attribute) rules_db_file (medkit.text.ner.simstring_matcher.SimstringMatcher attribute) (medkit.text.ner.SimstringMatcher attribute) (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) run() (medkit.audio.preprocessing.Downmixer method) (medkit.audio.preprocessing.downmixer.Downmixer method) (medkit.audio.preprocessing.power_normalizer.PowerNormalizer method) (medkit.audio.preprocessing.PowerNormalizer method) (medkit.audio.preprocessing.resampler.Resampler method) (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector method) (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector method) (medkit.audio.transcription.doc_transcriber.DocTranscriber method) (medkit.audio.transcription.doc_transcriber.TranscriptionOperation method) (medkit.audio.transcription.DocTranscriber method) (medkit.audio.transcription.hf_transcriber.HFTranscriber method) (medkit.audio.transcription.sb_transcriber.SBTranscriber method) (medkit.audio.transcription.TranscriptionOperation method) (medkit.core.audio.operation.PreprocessingOperation method) (medkit.core.audio.operation.SegmentationOperation method) (medkit.core.audio.PreprocessingOperation method) (medkit.core.audio.SegmentationOperation method) (medkit.core.doc_pipeline.DocPipeline method) (medkit.core.DocOperation method) (medkit.core.DocPipeline method) (medkit.core.operation.DocOperation method) (medkit.core.Pipeline method) (medkit.core.pipeline.Pipeline method) (medkit.core.pipeline.PipelineCompatibleOperation method) (medkit.core.PipelineCompatibleOperation method) (medkit.core.text.ContextOperation method) (medkit.core.text.NEROperation method) (medkit.core.text.operation.ContextOperation method) (medkit.core.text.operation.NEROperation method) (medkit.core.text.operation.SegmentationOperation method) (medkit.core.text.SegmentationOperation method) (medkit.text.context.family_detector.FamilyDetector method) (medkit.text.context.FamilyDetector method) (medkit.text.context.hypothesis_detector.HypothesisDetector method) (medkit.text.context.HypothesisDetector method) (medkit.text.context.negation_detector.NegationDetector method) (medkit.text.context.NegationDetector method) (medkit.text.deid.PIIDetector method) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher method) (medkit.text.ner.duckling_matcher.DucklingMatcher method) (medkit.text.ner.DucklingMatcher method) (medkit.text.ner.edsnlp_date_matcher.EDSNLPDateMatcher method) (medkit.text.ner.edsnlp_tnm_matcher.EDSNLPTNMMatcher method) (medkit.text.ner.hf_entity_matcher.HFEntityMatcher method) (medkit.text.ner.iamsystem_matcher.IAMSystemMatcher method) (medkit.text.ner.nlstruct_entity_matcher.NLStructEntityMatcher method) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher method) (medkit.text.ner.regexp_matcher.RegexpMatcher method) (medkit.text.ner.RegexpMatcher method) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer method) (medkit.text.postprocessing.attribute_duplicator.AttributeDuplicator method) (medkit.text.postprocessing.AttributeDuplicator method) (medkit.text.postprocessing.document_splitter.DocumentSplitter method) (medkit.text.postprocessing.DocumentSplitter method) (medkit.text.preprocessing.char_replacer.CharReplacer method) (medkit.text.preprocessing.CharReplacer method) (medkit.text.preprocessing.duplicate_finder.DuplicateFinder method) (medkit.text.preprocessing.DuplicateFinder method) (medkit.text.preprocessing.eds_cleaner.EDSCleaner method) (medkit.text.preprocessing.EDSCleaner method) (medkit.text.preprocessing.regexp_replacer.RegexpReplacer method) (medkit.text.preprocessing.RegexpReplacer method) (medkit.text.relations.syntactic_relation_extractor.SyntacticRelationExtractor method) (medkit.text.segmentation.rush_sentence_tokenizer.RushSentenceTokenizer method) (medkit.text.segmentation.section_tokenizer.SectionTokenizer method) (medkit.text.segmentation.SectionTokenizer method) (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer method) (medkit.text.segmentation.SentenceTokenizer method) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer method) (medkit.text.segmentation.SyntagmaTokenizer method) (medkit.text.spacy.doc_pipeline.SpacyDocPipeline method) (medkit.text.spacy.pipeline.SpacyPipeline method) (medkit.text.spacy.SpacyDocPipeline method) (medkit.text.spacy.SpacyPipeline method) (medkit.text.translation.hf_translator.HFTranslator method) RushSentenceTokenizer (class in medkit.text.segmentation.rush_sentence_tokenizer)

S

same_beginning (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) sample_rate (medkit.audio.preprocessing.resampler.Resampler attribute) (medkit.core.audio.audio_buffer.AudioBuffer attribute) (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.AudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) sampling_mode (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute attribute) (medkit.text.ner.ADICAPNormAttribute attribute) save() (medkit.core.conversion.OutputConverter method) (medkit.core.OutputConverter method) (medkit.io.brat.BratOutputConverter method) (medkit.io.BratOutputConverter method) (medkit.io.doccano.DoccanoOutputConverter method) (medkit.io.DoccanoOutputConverter method) (medkit.io.rttm.RTTMOutputConverter method) (medkit.io.RTTMOutputConverter method) (medkit.io.srt.SRTOutputConverter method) (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable method) (medkit.training.trainable_component.TrainableComponent method) (medkit.training.TrainableComponent method) (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) save_audio_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) save_audio_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) save_audio_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) save_doc() (medkit.io.rttm.RTTMOutputConverter method) (medkit.io.RTTMOutputConverter method) (medkit.io.srt.SRTOutputConverter method) save_prov_to_dot() (in module medkit.tools) (in module medkit.tools._save_prov_to_dot) save_rules() (medkit.text.context.family_detector.FamilyDetector static method) (medkit.text.context.FamilyDetector static method) (medkit.text.context.hypothesis_detector.HypothesisDetector static method) (medkit.text.context.HypothesisDetector static method) (medkit.text.context.negation_detector.NegationDetector static method) (medkit.text.context.NegationDetector static method) (medkit.text.ner.regexp_matcher.RegexpMatcher static method) (medkit.text.ner.RegexpMatcher static method) (medkit.text.ner.simstring_matcher.SimstringMatcher static method) (medkit.text.ner.SimstringMatcher static method) save_section_definition() (medkit.text.segmentation.section_tokenizer.SectionTokenizer static method) (medkit.text.segmentation.SectionTokenizer static method) save_segments() (medkit.io.srt.SRTOutputConverter method) save_syntagma_definition() (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer static method) (medkit.text.segmentation.SyntagmaTokenizer static method) save_text_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) save_text_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) save_text_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) save_turn_segments() (medkit.io.rttm.RTTMOutputConverter method) (medkit.io.RTTMOutputConverter method) SBTranscriber (class in medkit.audio.transcription.sb_transcriber) score (medkit.core.text.entity_norm_attribute.EntityNormAttribute attribute) (medkit.core.text.EntityNormAttribute attribute) second (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.DateAttribute attribute) seconds (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) section_dict (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) section_name (medkit.text.segmentation.section_tokenizer.SectionModificationRule attribute) (medkit.text.segmentation.SectionModificationRule attribute) section_rules (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) SectionModificationRule (class in medkit.text.segmentation) (class in medkit.text.segmentation.section_tokenizer) SectionTokenizer (class in medkit.text.segmentation) (class in medkit.text.segmentation.section_tokenizer) seed (medkit.training.trainer_config.TrainerConfig attribute) (medkit.training.TrainerConfig attribute) Segment (class in medkit.core.audio) (class in medkit.core.audio.annotation) (class in medkit.core.text) (class in medkit.core.text.annotation) segment_label (medkit.text.postprocessing.document_splitter.DocumentSplitter attribute) (medkit.text.postprocessing.DocumentSplitter attribute) segment_turn_label (medkit.io.srt.SRTOutputConverter attribute) segmentation_batch_size (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) SegmentationOperation (class in medkit.core.audio) (class in medkit.core.audio.operation) (class in medkit.core.text) (class in medkit.core.text.operation) segments (medkit.core.text.annotation_container.TextAnnotationContainer property) (medkit.core.text.TextAnnotationContainer property) sem_types (medkit.core.text.umls_norm_attribute.UMLSNormAttribute attribute) (medkit.core.text.UMLSNormAttribute attribute) SEMGROUP_LABELS (in module medkit.text.ner.umls_utils) SEMGROUPS (in module medkit.text.ner.umls_utils) semgroups (medkit.text.ner.umls_utils.UMLSEntry attribute) semtypes (medkit.text.ner.umls_utils.UMLSEntry attribute) SENTENCE_LABEL (in module medkit.tools.e3c_corpus) SentenceTokenizer (class in medkit.text.segmentation) (class in medkit.text.segmentation.sentence_tokenizer) separators (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) SeqEvalEvaluator (class in medkit.text.metrics.ner) SeqEvalMetricsComputer (class in medkit.text.metrics.ner) SEQUENCE_LABELING (medkit.io.doccano.DoccanoTask attribute) (medkit.io.DoccanoTask attribute) set_prov_tracer() (medkit.core.doc_pipeline.DocPipeline method) (medkit.core.DocPipeline method) (medkit.core.Operation method) (medkit.core.operation.Operation method) (medkit.core.Pipeline method) (medkit.core.pipeline.Pipeline method) (medkit.core.pipeline.ProvCompatibleOperation method) (medkit.core.ProvCompatibleOperation method) (medkit.io.brat.BratInputConverter method) (medkit.io.BratInputConverter method) (medkit.io.doccano.DoccanoInputConverter method) (medkit.io.DoccanoInputConverter method) (medkit.io.rttm.RTTMInputConverter method) (medkit.io.RTTMInputConverter method) (medkit.io.spacy.SpacyInputConverter method) (medkit.io.srt.SRTInputConverter method)

SIGN_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules) similarity (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) simstring_db_file (medkit.text.ner.simstring_matcher.SimstringMatcher attribute) (medkit.text.ner.SimstringMatcher attribute) (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) SimstringMatcher (class in medkit.text.ner) (class in medkit.text.ner.simstring_matcher) SimstringMatcherNormalization (class in medkit.text.ner) (class in medkit.text.ner.simstring_matcher) SimstringMatcherRule (class in medkit.text.ner) (class in medkit.text.ner.simstring_matcher) source_data_items (medkit.core.Prov attribute) (medkit.core.prov_tracer.Prov attribute) source_doc_date (medkit.text.preprocessing.duplicate_finder.DuplicationAttribute attribute) (medkit.text.preprocessing.DuplicationAttribute attribute) source_doc_id (medkit.text.preprocessing.duplicate_finder.DuplicationAttribute attribute) (medkit.text.preprocessing.DuplicationAttribute attribute) source_id (medkit.core.text.annotation.Relation attribute) (medkit.core.text.Relation attribute) source_ids (medkit.core._prov_graph.ProvNode attribute) source_spans (medkit.text.preprocessing.duplicate_finder.DuplicationAttribute attribute) (medkit.text.preprocessing.DuplicationAttribute attribute) SPACE_RULES (in module medkit.text.preprocessing) (in module medkit.text.preprocessing.char_rules) spacy_attrs (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.pipeline.SpacyPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyPipeline attribute) spacy_entities (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.pipeline.SpacyPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyPipeline attribute) spacy_span_groups (medkit.text.spacy.doc_pipeline.SpacyDocPipeline attribute) (medkit.text.spacy.pipeline.SpacyPipeline attribute) (medkit.text.spacy.SpacyDocPipeline attribute) (medkit.text.spacy.SpacyPipeline attribute) SpacyDocPipeline (class in medkit.text.spacy) (class in medkit.text.spacy.doc_pipeline) SpacyInputConverter (class in medkit.io.spacy) SpacyOutputConverter (class in medkit.io.spacy) SpacyPipeline (class in medkit.text.spacy) (class in medkit.text.spacy.pipeline) Span (class in medkit.core.audio) (class in medkit.core.audio.span) (class in medkit.core.text) (class in medkit.core.text.span) span (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.Segment attribute) (medkit.io._brat_utils.BratAugmentedEntity attribute) (medkit.io._brat_utils.BratEntity attribute) span_groups (medkit.io.spacy.SpacyInputConverter attribute) spans (medkit.core.text.annotation.Segment attribute) (medkit.core.text.Segment attribute) speaker_label (medkit.audio.metrics.diarization.DiarizationEvaluator attribute) (medkit.io.rttm.RTTMInputConverter attribute) (medkit.io.rttm.RTTMOutputConverter attribute) (medkit.io.RTTMInputConverter attribute) (medkit.io.RTTMOutputConverter attribute) speech_label (medkit.audio.metrics.transcription.TranscriptionEvaluator attribute) split_on_newlines (medkit.text.segmentation.sentence_tokenizer.SentenceTokenizer attribute) (medkit.text.segmentation.SentenceTokenizer attribute) SRTInputConverter (class in medkit.io.srt) SRTOutputConverter (class in medkit.io.srt) start (medkit.core.audio.Span attribute) (medkit.core.audio.span.Span attribute) (medkit.core.text.Span attribute) (medkit.core.text.span.Span attribute) (medkit.io._brat_utils.BratAugmentedEntity property) (medkit.io._brat_utils.BratEntity property) steps (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) Store (class in medkit.core) (class in medkit.core.store) store (medkit.core.prov_tracer.ProvTracer attribute) (medkit.core.ProvTracer attribute) store_data_item() (medkit.core.prov_store.ProvStore method) (medkit.core.ProvStore method) (medkit.core.Store method) (medkit.core.store.Store method) store_op_desc() (medkit.core.prov_store.ProvStore method) (medkit.core.ProvStore method) strip() (in module medkit.core.text.utils) strip_chars (medkit.text.segmentation.section_tokenizer.SectionTokenizer attribute) (medkit.text.segmentation.SectionTokenizer attribute) (medkit.text.segmentation.syntagma_tokenizer.SyntagmaTokenizer attribute) (medkit.text.segmentation.SyntagmaTokenizer attribute) SubclassMapping (class in medkit.core.dict_conv) subj (medkit.io._brat_utils.BratRelation attribute) summary_method (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) support (medkit.audio.metrics.diarization.DiarizationEvaluatorResult attribute) switch_ratio (medkit.audio.segmentation.webrtc_voice_detector.WebRTCVoiceDetector attribute) SyntacticRelationExtractor (class in medkit.text.relations.syntactic_relation_extractor) SyntagmaTokenizer (class in medkit.text.segmentation) (class in medkit.text.segmentation.syntagma_tokenizer)

T

tag_subtokens (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) tagging_scheme (medkit.text.metrics.ner.SeqEvalEvaluator attribute) (medkit.text.metrics.ner.SeqEvalMetricsComputer attribute) (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) target (medkit.io._brat_utils.BratAttribute attribute) (medkit.io._brat_utils.BratNote attribute) target_id (medkit.core.text.annotation.Relation attribute) (medkit.core.text.Relation attribute) target_value (medkit.audio.preprocessing.power_normalizer.PowerNormalizer attribute) (medkit.audio.preprocessing.PowerNormalizer attribute) task (medkit.audio.transcription.hf_transcriber.HFTranscriber attribute) (medkit.io.doccano.DoccanoInputConverter attribute) (medkit.io.doccano.DoccanoOutputConverter attribute) (medkit.io.DoccanoInputConverter attribute) (medkit.io.DoccanoOutputConverter attribute) technic (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute attribute) (medkit.text.ner.ADICAPNormAttribute attribute) term (medkit.core.text.entity_norm_attribute.EntityNormAttribute attribute) (medkit.core.text.EntityNormAttribute attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherNormalization attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherRule attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) (medkit.text.ner.umls_utils.UMLSEntry attribute) text (medkit.core.text.annotation.Segment attribute) (medkit.core.text.document.TextDocument property) (medkit.core.text.Segment attribute) (medkit.core.text.TextDocument property) (medkit.io._brat_utils.BratAugmentedEntity attribute) (medkit.io._brat_utils.BratEntity attribute) (medkit.io._brat_utils.Grouping property) TEXT_ANNOTATION_LIST (medkit.io.medkit_json._common.ContentType attribute) TEXT_CLASSIFICATION (medkit.io.doccano.DoccanoTask attribute) (medkit.io.DoccanoTask attribute) text_docs (medkit.core.Collection attribute) (medkit.core.collection.Collection attribute) TEXT_DOCUMENT (medkit.io.medkit_json._common.ContentType attribute) TEXT_DOCUMENT_LIST (medkit.io.medkit_json._common.ContentType attribute) text_spans_to_audio_spans (medkit.audio.transcription.transcribed_text_document.TranscribedTextDocument attribute) (medkit.audio.transcription.TranscribedTextDocument attribute) TextAnnotation (class in medkit.core.text) (class in medkit.core.text.annotation) TextAnnotationContainer (class in medkit.core.text) (class in medkit.core.text.annotation_container) TextClassificationEvaluator (class in medkit.text.metrics.classification) TextDocument (class in medkit.core.text) (class in medkit.core.text.document) threshold (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcher attribute) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) TNMAttribute (class in medkit.text.ner.tnm_attribute) to_attribute() (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherNormalization method) to_brat() (medkit.core.Attribute method) (medkit.core.attribute.Attribute method) (medkit.core.text.entity_norm_attribute.EntityNormAttribute method) (medkit.core.text.EntityNormAttribute method) (medkit.text.ner.date_attribute.DateAttribute method) (medkit.text.ner.date_attribute.DurationAttribute method) (medkit.text.ner.date_attribute.RelativeDateAttribute method) (medkit.text.ner.DateAttribute method) (medkit.text.ner.DurationAttribute method) (medkit.text.ner.RelativeDateAttribute method) (medkit.text.ner.tnm_attribute.TNMAttribute method) to_device() (medkit.training.BatchData method) (medkit.training.utils.BatchData method) to_dict() (medkit.audio.transcription.transcribed_text_document.TranscribedTextDocument method) (medkit.audio.transcription.TranscribedTextDocument method) (medkit.core._prov_graph.ProvGraph method) (medkit.core._prov_graph.ProvNode method) (medkit.core.Attribute method) (medkit.core.attribute.Attribute method) (medkit.core.audio.annotation.Segment method) (medkit.core.audio.audio_buffer.AudioBuffer method) (medkit.core.audio.audio_buffer.FileAudioBuffer method) (medkit.core.audio.audio_buffer.MemoryAudioBuffer method) (medkit.core.audio.audio_buffer.PlaceholderAudioBuffer method) (medkit.core.audio.AudioBuffer method) (medkit.core.audio.AudioDocument method) (medkit.core.audio.document.AudioDocument method) (medkit.core.audio.FileAudioBuffer method) (medkit.core.audio.MemoryAudioBuffer method) (medkit.core.audio.Segment method) (medkit.core.audio.Span method) (medkit.core.audio.span.Span method) (medkit.core.Collection method) (medkit.core.collection.Collection method) (medkit.core.dict_conv.DictConvertible method) (medkit.core.operation_desc.OperationDescription method) (medkit.core.OperationDescription method) (medkit.core.pipeline.PipelineStep method) (medkit.core.PipelineStep method) (medkit.core.text.annotation.Relation method) (medkit.core.text.annotation.Segment method) (medkit.core.text.annotation.TextAnnotation method) (medkit.core.text.AnySpan method) (medkit.core.text.document.TextDocument method) (medkit.core.text.entity_norm_attribute.EntityNormAttribute method) (medkit.core.text.EntityNormAttribute method) (medkit.core.text.ModifiedSpan method) (medkit.core.text.Relation method) (medkit.core.text.Segment method) (medkit.core.text.Span method) (medkit.core.text.span.AnySpan method) (medkit.core.text.span.ModifiedSpan method) (medkit.core.text.span.Span method) (medkit.core.text.TextAnnotation method) (medkit.core.text.TextDocument method) (medkit.core.text.umls_norm_attribute.UMLSNormAttribute method) (medkit.core.text.UMLSNormAttribute method) (medkit.text.ner.adicap_norm_attribute.ADICAPNormAttribute method) (medkit.text.ner.ADICAPNormAttribute method) (medkit.text.ner.date_attribute.DateAttribute method) (medkit.text.ner.date_attribute.DurationAttribute method) (medkit.text.ner.date_attribute.RelativeDateAttribute method) (medkit.text.ner.DateAttribute method) (medkit.text.ner.DurationAttribute method) (medkit.text.ner.RelativeDateAttribute method) (medkit.text.ner.tnm_attribute.TNMAttribute method) (medkit.text.ner.umls_utils.UMLSEntry method) (medkit.text.preprocessing.duplicate_finder.DuplicationAttribute method) (medkit.text.preprocessing.DuplicationAttribute method) (medkit.training.trainer_config.TrainerConfig method) (medkit.training.TrainerConfig method)

to_spacy() (medkit.core.Attribute method) (medkit.core.attribute.Attribute method) (medkit.core.text.entity_norm_attribute.EntityNormAttribute method) (medkit.core.text.EntityNormAttribute method) (medkit.text.ner.date_attribute.DateAttribute method) (medkit.text.ner.date_attribute.DurationAttribute method) (medkit.text.ner.date_attribute.RelativeDateAttribute method) (medkit.text.ner.DateAttribute method) (medkit.text.ner.DurationAttribute method) (medkit.text.ner.RelativeDateAttribute method) (medkit.text.ner.tnm_attribute.TNMAttribute method) to_str() (medkit.io._brat_utils.BratAnnConfiguration method) (medkit.io._brat_utils.BratAttribute method) (medkit.io._brat_utils.BratEntity method) (medkit.io._brat_utils.BratNote method) (medkit.io._brat_utils.BratRelation method) tokenizer (medkit.text.metrics.ner.SeqEvalEvaluator attribute) tokenizer_max_length (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) top_values_by_attr (medkit.io._brat_utils.BratAnnConfiguration attribute) (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratOutputConverter attribute) torch_device (medkit.audio.segmentation.pa_speaker_detector.PASpeakerDetector attribute) total_speech (medkit.audio.metrics.diarization.DiarizationEvaluatorResult attribute) train() (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) train_dataloader (medkit.training.Trainer attribute) (medkit.training.trainer.Trainer attribute) TrainableComponent (class in medkit.training) (class in medkit.training.trainable_component) Trainer (class in medkit.training) (class in medkit.training.trainer) TrainerCallback (class in medkit.training) (class in medkit.training.callbacks) TrainerConfig (class in medkit.training) (class in medkit.training.trainer_config) training_epoch() (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) TranscribedTextDocument (class in medkit.audio.transcription) (class in medkit.audio.transcription.transcribed_text_document) transcription_attr_label (medkit.io.srt.SRTInputConverter attribute) (medkit.io.srt.SRTOutputConverter attribute) transcription_label (medkit.audio.metrics.transcription.TranscriptionEvaluator attribute) transcription_operation (medkit.audio.transcription.doc_transcriber.DocTranscriber attribute) (medkit.audio.transcription.DocTranscriber attribute) TranscriptionEvaluator (class in medkit.audio.metrics.transcription) TranscriptionEvaluatorResult (class in medkit.audio.metrics.transcription) TranscriptionOperation (class in medkit.audio.transcription) (class in medkit.audio.transcription.doc_transcriber) transform_entities_to_tags() (in module medkit.text.ner.hf_tokenization_utils) translation_model (medkit.text.translation.hf_translator.HFTranslator attribute) trim() (medkit.core.audio.audio_buffer.AudioBuffer method) (medkit.core.audio.audio_buffer.FileAudioBuffer method) (medkit.core.audio.audio_buffer.MemoryAudioBuffer method) (medkit.core.audio.audio_buffer.PlaceholderAudioBuffer method) (medkit.core.audio.AudioBuffer method) (medkit.core.audio.FileAudioBuffer method) (medkit.core.audio.MemoryAudioBuffer method) trim_duration() (medkit.core.audio.audio_buffer.AudioBuffer method) (medkit.core.audio.AudioBuffer method) trim_end (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) trim_start (medkit.core.audio.audio_buffer.FileAudioBuffer attribute) (medkit.core.audio.FileAudioBuffer attribute) tumour (medkit.text.ner.tnm_attribute.TNMAttribute attribute) tumour_specification (medkit.text.ner.tnm_attribute.TNMAttribute attribute) tumour_suffix (medkit.text.ner.tnm_attribute.TNMAttribute attribute) turn_label (medkit.audio.metrics.diarization.DiarizationEvaluator attribute) (medkit.io.rttm.RTTMInputConverter attribute) (medkit.io.rttm.RTTMOutputConverter attribute) (medkit.io.RTTMInputConverter attribute) (medkit.io.RTTMOutputConverter attribute) turn_segment_label (medkit.io.srt.SRTInputConverter attribute) type (medkit.io._brat_utils.AttributeConf attribute) (medkit.io._brat_utils.BratAttribute attribute) (medkit.io._brat_utils.BratAugmentedEntity attribute) (medkit.io._brat_utils.BratEntity attribute) (medkit.io._brat_utils.BratNote attribute) (medkit.io._brat_utils.BratRelation attribute) (medkit.io._brat_utils.Grouping attribute) (medkit.io._brat_utils.RelationConf attribute) (medkit.text.context.hypothesis_detector.HypothesisRuleMetadata attribute) (medkit.text.context.hypothesis_detector.HypothesisVerbMetadata attribute) (medkit.text.context.HypothesisRuleMetadata attribute) (medkit.text.context.HypothesisVerbMetadata attribute)

U

uid (medkit.core.annotation.Annotation attribute) (medkit.core.Attribute attribute) (medkit.core.attribute.Attribute attribute) (medkit.core.audio.annotation.Segment attribute) (medkit.core.audio.AudioDocument attribute) (medkit.core.audio.document.AudioDocument attribute) (medkit.core.audio.Segment attribute) (medkit.core.data_item.IdentifiableDataItem attribute) (medkit.core.Document attribute) (medkit.core.document.Document attribute) (medkit.core.IdentifiableDataItem attribute) (medkit.core.Operation attribute) (medkit.core.operation.Operation attribute) (medkit.core.operation_desc.OperationDescription attribute) (medkit.core.OperationDescription attribute) (medkit.core.Pipeline attribute) (medkit.core.pipeline.Pipeline attribute) (medkit.core.text.annotation.TextAnnotation attribute) (medkit.core.text.document.TextDocument attribute) (medkit.core.text.TextAnnotation attribute) (medkit.core.text.TextDocument attribute) (medkit.io._brat_utils.BratAttribute attribute) (medkit.io._brat_utils.BratAugmentedEntity attribute) (medkit.io._brat_utils.BratEntity attribute) (medkit.io._brat_utils.BratNote attribute) (medkit.io._brat_utils.BratRelation attribute) (medkit.io._brat_utils.Grouping attribute) (medkit.io.brat.BratInputConverter attribute) (medkit.io.brat.BratOutputConverter attribute) (medkit.io.BratInputConverter attribute) (medkit.io.BratOutputConverter attribute) (medkit.io.doccano.DoccanoInputConverter attribute) (medkit.io.doccano.DoccanoOutputConverter attribute) (medkit.io.DoccanoInputConverter attribute) (medkit.io.DoccanoOutputConverter attribute) (medkit.io.rttm.RTTMInputConverter attribute) (medkit.io.RTTMInputConverter attribute) (medkit.io.spacy.SpacyInputConverter attribute) (medkit.io.spacy.SpacyOutputConverter attribute) (medkit.io.srt.SRTInputConverter attribute)

umls_dir (medkit.text.ner.umls_matcher.UMLSMatcher attribute) (medkit.text.ner.UMLSMatcher attribute) umls_mrconso_file (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) umls_terms_file (medkit.text.ner.umls_coder_normalizer.UMLSCoderNormalizer attribute) umls_version (medkit.core.text.umls_norm_attribute.UMLSNormAttribute property) (medkit.core.text.UMLSNormAttribute property) UMLSCoderNormalizer (class in medkit.text.ner.umls_coder_normalizer) UMLSEntry (class in medkit.text.ner.umls_utils) UMLSMatcher (class in medkit.text.ner) (class in medkit.text.ner.umls_matcher) UMLSNormAttribute (class in medkit.core.text) (class in medkit.core.text.umls_norm_attribute) unicode_sensitive (medkit.text.context.family_detector.FamilyDetectorRule attribute) (medkit.text.context.FamilyDetectorRule attribute) (medkit.text.context.hypothesis_detector.HypothesisDetectorRule attribute) (medkit.text.context.HypothesisDetectorRule attribute) (medkit.text.context.negation_detector.NegationDetectorRule attribute) (medkit.text.context.NegationDetectorRule attribute) (medkit.text.ner._base_simstring_matcher.BaseSimstringMatcherRule attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMatcherRule attribute) update_learning_rate() (medkit.training.Trainer method) (medkit.training.trainer.Trainer method) url (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute)

V

valid_model (medkit.text.ner.hf_entity_matcher.HFEntityMatcher attribute) (medkit.text.ner.hf_entity_matcher_trainable.HFEntityMatcherTrainable attribute) value (medkit.core.Attribute attribute) (medkit.core.attribute.Attribute attribute) (medkit.io._brat_utils.AttributeConf attribute) (medkit.io._brat_utils.BratAttribute attribute) (medkit.io._brat_utils.BratNote attribute) (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute) (medkit.text.ner.tnm_attribute.TNMAttribute attribute)

verbs (medkit.text.context.hypothesis_detector.HypothesisDetector attribute) (medkit.text.context.HypothesisDetector attribute) version (medkit.text.ner.duckling_matcher.DucklingMatcher attribute) (medkit.text.ner.DucklingMatcher attribute) (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) (medkit.text.ner.regexp_matcher.RegexpMatcherRule attribute) (medkit.text.ner.regexp_matcher.RegexpMetadata attribute) (medkit.text.ner.RegexpMatcherRule attribute) (medkit.text.ner.RegexpMetadata attribute) (medkit.text.ner.tnm_attribute.TNMAttribute attribute) version_year (medkit.text.ner.tnm_attribute.TNMAttribute attribute)

W

WebRTCVoiceDetector (class in medkit.audio.segmentation.webrtc_voice_detector) weeks (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute)

wer (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) window (medkit.text.ner.quick_umls_matcher.QuickUMLSMatcher attribute) word_deletions (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) word_insertions (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) word_substitutions (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute) word_support (medkit.audio.metrics.transcription.TranscriptionEvaluatorResult attribute)

Y

year (medkit.text.ner.date_attribute.DateAttribute attribute) (medkit.text.ner.DateAttribute attribute) years (medkit.text.ner.date_attribute.DurationAttribute attribute) (medkit.text.ner.date_attribute.RelativeDateAttribute attribute) (medkit.text.ner.DurationAttribute attribute) (medkit.text.ner.RelativeDateAttribute attribute)