medkit.text.ner.iamsystem_matcher

Classes

MedkitKeyword	A recommended iamsystem's IEntity implementation.
IAMSystemMatcher	Entity annotator and linker based on iamsystem library.

Module Contents

class medkit.text.ner.iamsystem_matcher.MedkitKeyword

A recommended iamsystem’s IEntity implementation.

This class is implemented to allow user to define one of both values of kb_id or kb_name with its iamsystem keyword. The entity label may be also provided if the user wants to define a category for the searched keyword (e.g., “drug” label for “Vicodin” keyword)

label: str

kb_id: str

kb_name: str | None

ent_label: str | None

class medkit.text.ner.iamsystem_matcher.IAMSystemMatcher(matcher: iamsystem, label_provider: LabelProvider | None = None, attrs_to_copy: list[str] | None = None, name: str | None = None, uid: str | None = None)

Bases: medkit.core.text.NEROperation

Entity annotator and linker based on iamsystem library.

init_args

matcher

label_provider

attrs_to_copy

run(segments: list[medkit.core.text.Segment]) → list[medkit.core.text.Entity]

_create_entity_from_iamsystem_ann(ann: iamsystem, segment: medkit.core.text.Segment)